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Biochemical Space

Processes

+ Cyanobacterium in its environment
o Environmental processes
+ Cellular processes
o Respiration and photosynthesis
o Carbon concentrating mechanism (CCM)
o Respiration
o Clock mechanism
o Metabolism

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proton{+} [h{+}]



Annotations
Models
Relations
Rules
Processes
+External links
chebi:24636

Part of:

+medium
+extracellular space
+carboxysome
+periplasmic space
+cytosol
+cytoplasmic membrane
+lumen

Is state of:

+proton
+plastoquinone reduction in the thylakoid membrane 1
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 5 h{+}::cyt + pq::tlm => NADP{+}::cyt + 4 h{+}::lum + pqh2::tlm
modifier: NDH1
Details
+protonation Qb{2-} to pqh2
the double reduced secondary quinone acceptor Qb2- is protonated plastoquinol and released from the Qb-binding pocket of the PSII D1 protein to plastoquinon pool.
Rule: qb{2-}::ps2::tlm + 2 h{+}::cyt <=> qb{empty}::ps2::tlm + pqh2::tlm
Details
+ATP synthesis in periplasmic space
ATP synthesis, proton translocation from periplasm to cytoplasm
Rule: 3 ADP::cyt + 3 orthophosphate::cyt + 14 h{+}::pps => 3 ATP::cyt + 14 h{+}::cyt + 3 H2O::cyt
modifier: ATPase
Details
+ATP synthesis in lumen
ATP synthesis, proton translocation from thylakoid lumen to cytoplasm
Rule: 3 ADP::cyt + 3 orthophosphate::cyt + 14 h{+}::lum => 3 ATP::cyt + 14 h{+}::cyt + 3 H2O::cyt
modifier: ATPase
Details
+plastoquinole oxidation in the cytoplasmic membrane
oxidation of plastoquinole in the cytoplasmic membrane
Rule: pqh2::cym + O2::cyt + 2 h{+}::cyt => pq::cym + 2 H2O::cyt
modifier: CydBD
Details
+plastoquinole oxidation in the thylakoid membrane
oxidation of plastoquinole in the thylakoid membrane
Rule: pqh2::tlm + O2::lum + 2 h{+}::lum => pq::tlm + 2 H2O::lum
modifier: CydBD
Details
+plastocyanin (PC) oxidation in the periplasmatic space
oxidation of plastocyanin in the periplasmatic space, proton translocation from cytoplasm (cyt) to periplasmatic space (pps)
Rule: 4 pc{-}::pps + O2::pps + 8 h{+}::cyt => 4 pc{+}::pps + 2 H2O::pps + 4 h{+}::pps
modifier: Cox
Details
+plastocyanin (PC) oxidation in the thylakoid lumen
oxidation of plastocyanin in the thylakoid lumen, proton translocation from cytoplasm (cyt) to thylakoid lumen (lum)
Rule: 4 pc{-}::lum + O2::lum + 8 h{+}::cyt => 4 pc{+}::lum + 2 H2O::lum + 4 h{+}::lum
modifier: Cox
Details
+plastoquinone reduction in the cytoplasmic membrane 2
oxidation of NADH and reduction of plastoquinone in the cytoplasmic membrane
Rule: NADH::cyt + h{+}::cyt + pq::cym => NAD+::cyt + pqh2::cym
Details
+plastoquinone reduction in the thylakoid membrane 3
oxidation of NADH and reduction of plastoquinone in the thylakoid membrane
Rule: NADH::cyt + h{+}::cyt + pq::tlm => NAD+::cyt + pqh2::tlm
modifier: NDH2
Details
+plastoquinone reduction in the cytoplasmic membrane 3
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::cym + H2O::cyt + CO2::pps => NADP{+}::cyt + 4 h{+}::pps + pqh2::cym + HCO3{-}::cyt
modifier: NDH1_4
Details
+plastoquinone reduction in the thylakoid membrane 4
oxidation of NADPH and reduction of plastoquinone in the thylakoid membrane
Rule: NADPH::cyt + 4 h{+}::cyt + pq::tlm + H2O::cyt + CO2::lum => NADP{+}::cyt + 4 h{+}::lum + pqh2::tlm + HCO3{-}::cyt
modifier: NDH1_3
Details
+plastoquinone reduction in the cytoplasmic membrane 4
oxidation of NADPH and reduction of plastoquinone in the cytoplasmic membrane
Rule: NADPH::cyt + 5 h{+}::cyt + pq::cym => NADP{+}::cyt + 4 h{+}::pps + pqh2::cym
modifier: NDH1
Details
+plastoquinone reduction
Rule: pq{n}::tlm + 2 h{+}::cyt + bhc{2-}::cytb6f::tlm <=> pqh2::tlm + bhc{n}::cytb6f::tlm
Details
+plastoquinol oxidation
Rule: pqh2{n}::tlm + cytb6f(bl{n} | f{n})::tlm <=> pq::tlm + 2 h{+}::lum + cytb6f(bl{-} | f{-})::tlm
Details
+Carbon dioxide hydration
Carbon dioxide hydration
Rule: CO2::liq + H2O::liq <=> HCO3{-}::liq + h{+}::liq
Details
+Water self-dissociation
Water self-dissociation.
Rule: H2O::liq <=> h{+}::liq + OH{-}::liq
Details
+Bicarbonate/carbonate conversion I
Bicarbonate/carbonate conversion at low pH.
Rule: HCO3{-}::liq <=> CO3{2-}::liq + h{+}::liq
Details
+Buffer acid-base reaction
Buffer acid-base reaction.
Rule: HA::liq <=> h{+}::liq + A{-}::liq
Details
+Shikimate:NADP+ 3-oxidoreductase
Rule: C00493::cyt + NADP{+}::cyt <=> C02637::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-25
Details
+Prephenate:NAD+ oxidoreductase(decarboxylating)
Rule: C00254::cyt + NAD+::cyt => C01179::cyt + CO2::cyt + NADH::cyt + h{+}::cyt
modifier: 1-3-1-12
Details
+L-glutamate:NAD+ oxidoreductase (transaminating)
Rule: C00064::cyt + C00026::cyt + NADH::cyt + h{+}::cyt => 2 C00025::cyt + NAD+::cyt
modifier: 1-4-1-14
Details
+L-Glutamate:NADP+ oxidoreductase (deaminating)
Rule: C00025::cyt + NADP{+}::cyt + H2O::cyt <=> C00026::cyt + C00014::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-4-1-4
Details
+L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)
Rule: C03287::cyt + NADPH::cyt + h{+}::cyt => C01165::cyt + orthophosphate::cyt + NADP{+}::cyt
modifier: 1-2-1-41
Details
+L-glutamate gamma-semialdehyde:NAD+ oxidoreductase
Rule: C01165::cyt + NAD+::cyt + H2O::cyt => C00025::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-88
Details
+(S)-1-pyrroline-5-carboxylate:NAD+ oxidoreductase
Rule: C03912::cyt + NAD+::cyt + 2 H2O::cyt => C00025::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-88
Details
+L-Proline:NADP+ 5-oxidoreductase
Rule: C03912::cyt + NADPH::cyt + h{+}::cyt => C00148::cyt + NADP{+}::cyt
modifier: 1-5-1-2
Details
+N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphrylating)
Rule: C01250::cyt + orthophosphate::cyt + NADP{+}::cyt <=> C04133::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-2-1-38
Details
+hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)
Rule: 2 ATP::cyt + C00064::cyt + HCO3{-}::cyt + H2O::cyt + h{+}::cyt => 2 ADP::cyt + orthophosphate::cyt + C00025::cyt + C00169::cyt
modifier: 6-3-5-5
Details
+nitrite:ferredoxin oxidoreductase
Rule: C00244::cyt + 2 fd{-}::cyt + 2 h{+}::cyt => C00088::cyt + H2O::cyt + 2 fd{+}::cyt
modifier: 1-7-7-2
Details
+Ammonia:ferredoxin oxidoreductase
Rule: C00088::cyt + 6 fd{-}::cyt + 7 h{+}::cyt => C00014::cyt + 2 H2O::cyt + 6 fd{+}::cyt
modifier: 1-7-7-1
Details
+L-glutamate:ferredoxin oxidoreductase (transaminating)
Rule: C00064::cyt + C00026::cyt + 2 fd{-}::cyt + 2 h{+}::cyt => 2 C00025::cyt + 2 fd{+}::cyt
modifier: 1-4-7-1
Details
+trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase
Rule: C01157::cyt + NADP{+}::cyt => C04281::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-5-1-2
Details
+L-1-pyrroline-3-hydroxy-5-carboxylate:NAD+ oxidoreductase
Rule: C04281::cyt + NAD+::cyt + 2 H2O::cyt => C05947::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-88
Details
+L-homoserine:NADP+ oxidoreductase
Rule: C00441::cyt + NADPH::cyt + h{+}::cyt => C00263::cyt + NADP{+}::cyt
modifier: 1-1-1-3
Details
+L-Aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
Rule: C03082::cyt + NADPH::cyt + h{+}::cyt => C00441::cyt + orthophosphate::cyt + NADP{+}::cyt
modifier: 1-2-1-11
Details
+2,3,4,5-tetrahydrodipicolinate:NADP+ 4-oxidoreductase
Rule: C03340::cyt + NADPH::cyt + h{+}::cyt => C03972::cyt + NADP{+}::cyt
modifier: 1-17-1-8
Details
+R93
Rule: C05413::cyt + NADP{+}::cyt => C05414::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-14-99-x
Details
+R94
Rule: C05414::cyt + NADP{+}::cyt => C05430::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-14-99-x
Details
+R95
Rule: C05430::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C05431::cyt + 2 H2O::cyt + NADP{+}::cyt
Details
+R96
Rule: C05431::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C05432::cyt + 2 H2O::cyt + NADP{+}::cyt
Details
+beta-carotene,NADH:oxygen 3-oxidoreductase
Rule: C02094::cyt + NADH::cyt + h{+}::cyt + O2::cyt => C08591::cyt + NAD+::cyt + H2O::cyt
modifier: 1-14-13-x
Details
+beta-cryptoxanthin,NADH:oxygen 3'-oxidoreductase
Rule: C08591::cyt + NADH::cyt + h{+}::cyt + O2::cyt => C06098::cyt + NAD+::cyt + H2O::cyt
modifier: 1-14-13-x
Details
+echinenone,NADH:oxygen 3-oxidoreductase
Rule: C08592::cyt + NADH::cyt + h{+}::cyt + O2::cyt => C15966::cyt + NAD+::cyt + H2O::cyt
modifier: 1-14-13-x
Details
+R102
Rule: C02094::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C08592::cyt + NADP{+}::cyt + H2O::cyt + h{+}::cyt
Details
+L-glutamate-semialdehyde: NADP+ oxidoreductase(L-glutamyl-tRNA(Glu)-forming)
Rule: C02987::cyt + NADPH::cyt + h{+}::cyt => C03741::cyt + C01641::cyt + NADP{+}::cyt
modifier: 1-2-1-70
Details
+Magnesium-protoporphyrin IX chelatase
Rule: ATP::cyt + C02191::cyt + C00305::cyt + H2O::cyt => ADP::cyt + orthophosphate::cyt + C03516::cyt + 2 h{+}::cyt
modifier: 6-6-1-1
Details
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06265
Rule: C04536::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C11829::cyt + NADP{+}::cyt + H2O::cyt
modifier: 1-14-13-81
Details
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06266
Rule: C11829::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C11830::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-13-81
Details
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06267
Rule: C11830::cyt + NADPH::cyt + h{+}::cyt + O2::cyt => C11831::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-13-81
Details
+chlorophyllide-a:NADP+ oxidoreductase
Rule: C11831::cyt + NADPH::cyt + h{+}::cyt => C02880::cyt + NADP{+}::cyt
modifier: 1-3-1-75
Details
+Chlorophyllide-a:NADP+ 7,8-oxidoreductase
Rule: C02880::cyt + NADPH::cyt + h{+}::cyt => C02139::cyt + NADP{+}::cyt
modifier: 1-3-1-33
Details
+5-methyltetrahydrofolate:NADP+ oxidoreductase
Rule: C00143::cyt + NADPH::cyt + h{+}::cyt => C00440::cyt + NADP{+}::cyt
modifier: 1-5-1-20
Details
+glycolaldehyde:NAD+ oxidoreductase
Rule: C00266::cyt + NAD+::cyt + H2O::cyt => C00160::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-3
Details
+5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase
Rule: C00415::cyt + NADPH::cyt + h{+}::cyt => C00101::cyt + NADP{+}::cyt
modifier: 1-5-1-3
Details
+5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)
Rule: C00445::cyt + H2O::cyt <=> C00234::cyt + h{+}::cyt
modifier: 3-5-4-9
Details
+R148
Rule: HCO3{-}::cax + h{+}::cax <=> H2CO3::cax
Details
+NADPH:oxidized-thioredoxin oxidoreductase
Rule: C00343::cyt + NADPH::cyt + h{+}::cyt => C00342::cyt + NADP{+}::cyt
modifier: 1-8-1-9
Details
+superoxide:superoxide oxidoreductase
Rule: 2 O2{-}::cyt + 2 h{+}::cyt => C00027::cyt + O2::cyt
modifier: 1-15-1-1
Details
+glutathione:NADP+ oxidoreductase
Rule: 2 C00051::cyt + NADP{+}::cyt <=> C00127::cyt + NADPH::cyt + h{+}::cyt
Details
+R161
Rule: C01342::cyt <=> C00014::cyt + h{+}::cyt
Details
+Hydrogen-sulfide:ferredoxin oxidoreductase
Rule: C00094::cyt + 6 fd{-}::cyt + 6 h{+}::cyt => C00283::cyt + 6 fd{+}::cyt + 3 H2O::cyt
modifier: 1-8-7-1
Details
+glycine synthase
Rule: C00037::cyt + C00101::cyt + NAD+::cyt => C00143::cyt + C00014::cyt + CO2::cyt + NADH::cyt + h{+}::cyt
modifier: 2-1-2-10
Details
+D-Glycerate:NADP+ 2-oxidoreductase
Rule: C00258::cyt + NADP{+}::cyt <=> C00168::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-81
Details
+(R)-Glycerate:NADP+ oxidoreductase
Rule: C01146::cyt + NADPH::cyt + h{+}::cyt => C00258::cyt + NADP{+}::cyt
modifier: 1-1-1-60
Details
+glycine:NAD+ oxidoreductase (deaminating)
Rule: C00037::cyt + H2O::cyt + NAD+::cyt <=> C00048::cyt + C00014::cyt + NADH::cyt + h{+}::cyt
modifier: 1-4-1-1
Details
+S-adenosyl-L-methionine carboxy-lyase [(5-deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium-forming]
Rule: C00019::cyt + h{+}::cyt => C01137::cyt + CO2::cyt
modifier: 4-1-1-50
Details
+3-Phospho-D-glycerate:NAD+ 2-oxidoreductase
Rule: C00197::cyt + NAD+::cyt <=> C03232::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-95
Details
+D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase (phosphorylating)
Rule: C00236::cyt + NADPH::cyt + h{+}::cyt => C00118::cyt + orthophosphate::cyt + NADP{+}::cyt
modifier: 1-2-1-59
Details
+D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
Rule: C00118::cyt + orthophosphate::cyt + NAD+::cyt => C00236::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-12
Details
+dTDP-beta-L-rhamnose:NADP+ 4-oxidoreductase
Rule: C00688::cyt + NADPH::cyt + h{+}::cyt => C03319::cyt + NADP{+}::cyt
modifier: 1-1-1-133
Details
+D-Glyceraldehyde:NAD+ oxidoreductase
Rule: C00577::cyt + NAD+::cyt + H2O::cyt <=> C00258::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-3
Details
+glycerol:NADP+ oxidoreductase
Rule: C00116::cyt + NADP{+}::cyt <=> C00577::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-2
Details
+sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase
Rule: C00093::cyt + NAD+::cyt <=> C00111::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-94
Details
+protoheme ferro-lyase (protoporphyrin-forming)
Rule: C02191::cyt + Fe{2+}::cyt => C00032::cyt + 2 h{+}::cyt
modifier: 4-99-1-1
Details
+Heme O <=> Heme A
Rule: C15672::cyt + H2O::cyt <=> C15670::cyt + 4 h{+}::cyt
Details
+L-Histidinol:NAD+ oxidoreductase
Rule: C00860::cyt + NAD+::cyt => C01929::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-23
Details
+L-histidinal:NAD+ oxidoreductase
Rule: C01929::cyt + H2O::cyt + NAD+::cyt => C00135::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-23
Details
+2,3-Dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing)
Rule: C00900::cyt + NADPH::cyt + h{+}::cyt => C04039::cyt + NADP{+}::cyt
modifier: 1-1-1-86
Details
+(R)-2,3-Dihydroxy-3-methylpentanoate:NADP+ oxidoreductase (isomerizing)
Rule: C14463::cyt + NADPH::cyt + h{+}::cyt => C06007::cyt + NADP{+}::cyt
modifier: 1-1-1-86
Details
+(2R,3S)-3-isopropylmalate:NAD+ oxidoreductase
Rule: C04411::cyt + NAD+::cyt => C04236::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-85
Details
+(2R,3S)-3-methylmalate:NAD+ oxidoreductase
Rule: C06032::cyt + NAD+::cyt => C00109::cyt + CO2::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-85
Details
+Acetyl-CoA:carbon-dioxide ligase (ADP-forming)
Rule: ATP::cyt + C00024::cyt + HCO3{-}::cyt + h{+}::cyt => ADP::cyt + orthophosphate::cyt + C00083::cyt
modifier: 6-4-1-2
Details
+(3R)-3-Hydroxybutanoyl-[acyl-carrier protein]:NADP+ oxidoreductase
Rule: C04618::cyt + NADP{+}::cyt <=> C05744::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxyhexanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C05747::cyt + NADP{+}::cyt <=> C05746::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxyoctanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C04620::cyt + NADP{+}::cyt <=> C05750::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxydecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C04619::cyt + NADP{+}::cyt <=> C05753::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxydodecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C05757::cyt + NADP{+}::cyt <=> C05756::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxytetradecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C04688::cyt + NADP{+}::cyt <=> C05759::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+(3R)-3-Hydroxypalmitoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
Rule: C04633::cyt + NADP{+}::cyt <=> C05762::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-100
Details
+3-Oxostearoyl-[acp] + NADPH + H+ <=> (R)-3-Hydroxyoctadecanoyl-[acp] + NADP+
Rule: C16219::cyt + NADPH::cyt + h{+}::cyt <=> C16220::cyt + NADP{+}::cyt
modifier: 1-1-1-100
Details
+butyryl-[acp]:NADP+ trans-2-oxidoreductase
Rule: C05745::cyt + NADP{+}::cyt <=> C04246::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+hexanoyl-[acp]:NAD+ trans-2-oxidoreductase
Rule: C05749::cyt + NADP{+}::cyt <=> C05748::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+octanoyl-[acp]:NAD+ trans-2-oxidoreductase
Rule: C05752::cyt + NADP{+}::cyt <=> C05751::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+decanoyl-[acp]:NADP+ trans-2-oxidoreductase
Rule: C05755::cyt + NADP{+}::cyt <=> C05754::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+dodecanoyl-[acp]:NADP+ trans-2-oxidoreductase
Rule: C05223::cyt + NADP{+}::cyt <=> C05758::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+tetradecanoyl-[acp]:NADP+ trans-2-oxidoreductase
Rule: C05761::cyt + NADP{+}::cyt <=> C05760::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+hexadecanoyl-[acp]:NADP+ trans-2-oxidoreductase
Rule: C05764::cyt + NADP{+}::cyt <=> C05763::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-10
Details
+enoyl-[acyl-carrier-protein] reductase (NADPH, Si-specific) (enzyme name)
Rule: C16221::cyt + NADPH::cyt + h{+}::cyt <=> C04088::cyt + NADP{+}::cyt
modifier: 1-3-1-10
Details
+stearoyl-CoA 9-desaturase (enzyme name) R370
Rule: C05764::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C16520::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-1
Details
+stearoyl-CoA 9-desaturase (enzyme name) R371
Rule: C04088::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C01203::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-1
Details
+R372
Rule: C01203::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C16160::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-x
Details
+linoleoyl-CoA desaturase (enzyme name) R373
Rule: C16160::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> E17::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-3
Details
+R374
Rule: C16160::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> C16161::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-x
Details
+linoleoyl-CoA desaturase (enzyme name) R375
Rule: C16161::cyt + NADPH::cyt + h{+}::cyt + O2::cyt <=> E36::cyt + NADP{+}::cyt + 2 H2O::cyt
modifier: 1-14-19-3
Details
+Nicotinate-nucleotide:pyrophosphate phosphoribosyltransferase (carboxylating)
Rule: C03722::cyt + C00119::cyt + h{+}::cyt => C01185::cyt + C00013::cyt + CO2::cyt
modifier: 2-4-2-19
Details
+Cobamide coenzyme + GMP <=> Adenosine-GDP-cobinamide + alpha-Ribazole R389
Rule: C01185::cyt + C00013::cyt <=> C00253::cyt + C00119::cyt + h{+}::cyt
modifier: 6-3-4-21
Details
+(R)-Pantoate:NADP+ 2-oxidoreductase
Rule: C00522::cyt + NADP{+}::cyt <=> C00966::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-86
Details
+UDP-N-acetylmuramate:NADP+ oxidoreductase
Rule: C01050::cyt + NADP{+}::cyt <=> C04631::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-98
Details
+D-glucose-6-phosphate:NADP+ 1-oxidoreductase
Rule: C00092::cyt + NADP{+}::cyt => C01236::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-49
Details
+6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)
Rule: C00345::cyt + NADP{+}::cyt => C00199::cyt + CO2::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-44
Details
+pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating)
Rule: C00022::cyt + C00010::cyt + NAD+::cyt => C00024::cyt + CO2::cyt + NADH::cyt + h{+}::cyt
modifier: 1-8-1-4, 1-2-4-1, 2-3-1-12
Details
+Acetaldehyde:NAD+ oxidoreductase
Rule: C00033::cyt + NADH::cyt + h{+}::cyt => C00084::cyt + NAD+::cyt + H2O::cyt
modifier: 1-2-1-3
Details
+ethanol:NAD+ oxidoreductase
Rule: C00084::cyt + NADH::cyt + h{+}::cyt => C00469::cyt + NAD+::cyt
modifier: 1-1-1-1
Details
+Ethanol:NADP+ oxidoreductase
Rule: C00084::cyt + NADPH::cyt + h{+}::cyt => C00469::cyt + NADP{+}::cyt
modifier: 1-1-1-2
Details
+phosphoenolpyruvate carboxylase (enzyme name)
Rule: C00074::cyt + HCO3{-}::cyt + h{+}::cyt => orthophosphate::cyt + C00036::cyt
modifier: 4-1-1-31
Details
+(S)-malate:NAD+ oxidoreductase
Rule: C00149::cyt + NAD+::cyt <=> C00036::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-37
Details
+L-Alanine:NAD+ oxidoreductase (deaminating)
Rule: C00041::cyt + NAD+::cyt + H2O::cyt <=> C00022::cyt + C00014::cyt + NADH::cyt + h{+}::cyt
modifier: 1-4-1-1
Details
+Isocitrate:NADP+ oxidoreductase (decarboxylating)
Rule: C00311::cyt + NADP{+}::cyt => C00026::cyt + CO2::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-42
Details
+(R)-Lactate:NAD+ oxidoreductase
Rule: C00256::cyt + NAD+::cyt <=> C00022::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-28
Details
+(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)
Rule: C00149::cyt + NADP{+}::cyt => C00022::cyt + CO2::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-38
Details
+pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Rule: 2 fd{+}::cyt + C00022::cyt + C00010::cyt => 2 fd{-}::cyt + C00024::cyt + CO2::cyt + 2 h{+}::cyt
modifier: 1-2-7-1
Details
+Formate:ferricytochrome-b1 oxidoreductase
Rule: C00058::cyt + 2 C00995::cyt => CO2::cyt + 2 C00998::cyt + 2 h{+}::cyt
modifier: 1-2-2-1
Details
+succinate-semialdehyde:NADP+ oxidoreductase
Rule: C00232::cyt + NADP{+}::cyt + H2O::cyt => succinate::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-2-1-16
Details
+glycolate:acceptor 2-oxidoreductase
Rule: C00160::cyt + NAD+::cyt => C00048::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-99-14
Details
+5'-Phosphoribosylglycinamide + 5,10-Methenyltetrahydrofolate + H2O <=> 5'-Phosphoribosyl-N-formylgly
Rule: C03838::cyt + C00445::cyt + H2O::cyt => C04376::cyt + C00101::cyt + h{+}::cyt
modifier: 2-1-2-2
Details
+5-amino-1-(5-phospho-D-ribosyl)imidazole:carbon-dioxide ligase (ADP-forming)
Rule: ATP::cyt + C03373::cyt + HCO3{-}::cyt + h{+}::cyt => ADP::cyt + orthophosphate::cyt + C15667::cyt
modifier: 6-3-4-18
Details
+IMP:NAD+ oxidoreductase
Rule: C00130::cyt + NAD+::cyt + H2O::cyt => C00655::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-205
Details
+thymidylate synthase (FAD) (enzyme name)
Rule: C00143::cyt + C00365::cyt + h{+}::cyt + NADPH::cyt => C00101::cyt + C00364::cyt + NADP{+}::cyt
modifier: 2-1-1-148
Details
+R600
Rule: C03885::cyt + 4 h{+}::cyt => C17570::cyt + H2O::cyt
Details
+R601
Rule: C17570::cyt + C00019::cyt => pq::cyt + C00021::cyt + 2 h{+}::cyt
Details
+1,4-Dihydroxy-2-naphthoate + Phytyl diphosphate <=> 2-Phytyl-1,4-naphthoquinone + CO2 + Diphosphate
Rule: C03657::cyt + C05427::cyt => C13309::cyt + CO2::cyt + C00013::cyt + 2 h{+}::cyt
modifier: 2-5-1-x
Details
+5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase
Rule: C01268::cyt + NADPH::cyt + h{+}::cyt => C04454::cyt + NADP{+}::cyt
modifier: 1-1-1-193
Details
+FMNH2:NADP+ oxidoreductase
Rule: C01847::cyt + NADP{+}::cyt <=> C00061::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-5-1-38
Details
+5,6-dimethylbenzimidazole synthase (enzyme name)
Rule: C01847::cyt + O2::cyt + NADH::cyt + h{+}::cyt => C03114::cyt + C00279::cyt + H2O::cyt + NAD+::cyt
modifier: 1-13-11-79
Details
+S-adenosylmethioninamine:putrescine 3-aminopropyltransferase
Rule: C01137::cyt + C00134::cyt => C00170::cyt + C00315::cyt + h{+}::cyt
modifier: 2-5-1-16
Details
+S-adenosylmethioninamine:spermidine 3-aminopropyltransferase
Rule: C01137::cyt + C00315::cyt => C00170::cyt + C00750::cyt + h{+}::cyt
modifier: 2-5-1-16
Details
+(R)-3-Hydroxybutanoyl-CoA:NADP+ oxidoreductase
Rule: C03561::cyt + NADP{+}::cyt <=> C00332::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-1-1-36
Details
+1-Deoxy-D-xylulose-5-phosphate isomeroreductase
Rule: C11437::cyt + NADPH::cyt + h{+}::cyt => C11434::cyt + NADP{+}::cyt
modifier: 1-1-1-267
Details
+(E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:oxidized ferredoxin oxidoreductase (hydrating)
Rule: C11453::cyt + 2 fd{-}::cyt + 2 h{+}::cyt => C11811::cyt + H2O::cyt + 2 fd{+}::cyt
modifier: 1-17-7-1
Details
+isopentenyl-diphosphate:NAD(P)+ oxidoreductase
Rule: C11811::cyt + NADPH::cyt + h{+}::cyt => C00129::cyt + NADP{+}::cyt + H2O::cyt
modifier: 1-17-1-2
Details
+dimethyallyl diphosphate:NADP+ oxidoreductase
Rule: C11811::cyt + NADPH::cyt + h{+}::cyt => C00235::cyt + NADP{+}::cyt + H2O::cyt
modifier: 1-17-1-2
Details
+geranylgeranyl reductase
Rule: C00353::cyt + 3 h{+}::cyt + 3 NADPH::cyt => C05427::cyt + 3 NADP{+}::cyt
modifier: 1-3-1-83
Details
+R666
Rule: C00097::cyt + ATP::cyt + C11437::cyt + C00082::cyt + C00019::cyt + NADPH::cyt + 3 h{+}::cyt => C04327::cyt + C00013::cyt + C00073::cyt + C00041::cyt + C01468::cyt + C05198::cyt + CO2::cyt + 2 H2O::cyt + C00020::cyt + NADP{+}::cyt
Details
+2-methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate:4-methyl-5-(2-phosphoethyl)-thiazole 2-methyl
Rule: C04752::cyt + C04327::cyt + h{+}::cyt => C00013::cyt + C01081::cyt
modifier: 2-5-1-3
Details
+R669
Rule: h{+}::ext <=> h{+}::cyt
Details
+R676
Rule: h{+}::ext + C00031::ext => h{+}::cyt + C00031::cyt
Details
+R706
Rule: h{+}::cyt + C00076::ext <=> h{+}::ext + C00076::cyt
Details
+R707
Rule: h{+}::cyt + C01330::ext <=> h{+}::ext + C01330::cyt
Details
+R718
Rule: h{+}::cyt <=> h{+}::cax
Details
+D-erythrose 4-phosphate:NAD+ oxidoreductase
Rule: C00279::cyt + NAD+::cyt + H2O::cyt => C03393::cyt + NADH::cyt + h{+}::cyt
modifier: 1-2-1-72
Details
+4-phospho-D-erythronate:NAD+ 2-oxidoreductase
Rule: C03393::cyt + NAD+::cyt => C06054::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-290
Details
+NAD-dependent threonine 4-phosphate dehydrogenase
Rule: C06055::cyt + NAD+::cyt => C07335::cyt + NADH::cyt + h{+}::cyt
modifier: 1-1-1-262
Details
+precorrin-3A,NADH:oxygen oxidoreductase (20-hydroxylating)
Rule: C05772::cyt + O2::cyt + NADH::cyt + h{+}::cyt => C06406::cyt + NAD+::cyt + H2O::cyt
modifier: 1-14-13-83
Details
+precorrin-6Y:NADP+ oxidoreductase
Rule: C06319::cyt + NADP{+}::cyt <=> C06320::cyt + NADPH::cyt + h{+}::cyt
modifier: 1-3-1-54
Details
+hydrogenobyrinic-acid-a,c-diamide:cobalt cobalt-ligase (ADP-forming)
Rule: C06503::cyt + C00175::cyt + ATP::cyt + H2O::cyt => C06504::cyt + orthophosphate::cyt + ADP::cyt + h{+}::cyt
modifier: 6-6-1-2
Details
+cob(II)yrinic acid-a,c-diamide:FMN oxidoreductase
Rule: 2 C06504::cyt + C01847::cyt <=> 2 C06505::cyt + C00061::cyt + 2 h{+}::cyt
modifier: 1-16-8-1
Details
+ATP:cob(I)yrinic acid-a,c-diamide Cobeta-adenosyltransferase
Rule: C06505::cyt + ATP::cyt + h{+}::cyt => C06506::cyt + C00536::cyt
modifier: 2-5-1-17
Details
+Nicotinate-nucleotide:dimethylbenzimidazole phospho-D-ribosyltransferase
Rule: C01185::cyt + C03114::cyt => C00253::cyt + C04778::cyt + h{+}::cyt
modifier: 2-4-2-21
Details
+Cobamide coenzyme + GMP <=> Adenosine-GDP-cobinamide + alpha-Ribazole R759
Rule: C06510::cyt + C05775::cyt => C00194::cyt + C00144::cyt + h{+}::cyt
modifier: 2-7-8-26
Details
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI