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Model repository

Models

+ Miyoshi et al. 2007
+ Plyusnina et al. (in prep.)
+ Hertel et al. 2013
+ Jablonsky et al. 2014
+ Clark et al. 2014 (in progress)
+ Fridlyand et al. 1995
o Grimaud et al. 2014
o E-cyano team 2017, clock & C-N metabolism
o Müller et al. 2019

Matrix analysis of Miyoshi et al. 2007

This page displays elementary flux modes analysis for selected model.

You can view information about desired mode clicking on it. Information about corresponding reactions will unfold.

You can also download SBRML file clicking on link below.


Modes
List of Matrix:

+1# Irreversible
Reactions:
1 * KaiB tetramer complex activation, KaiB4i -> KaiB4; CPKaiC6
1 * KaiB tetramer complex inactivation, KaiB4 -> KaiB4i; PPKaiC6
+2# Irreversible
Reactions:
1 * kaiBC mRNA trascription, -> kaiBC_mRNA; CPKaiC6 PPKaiC6
1 * kaiBC mRNA degradation, kaiBC_mRNA ->
+3# Irreversible
Reactions:
1 * kaiA mRNA transcription, -> kaiA_mRNA; CPKaiC6 PPKaiC6
1 * KaiAmRNA degradation, kaiA_mRNA ->
+4# Irreversible
Reactions:
1 * KaiA dimer and KaiB-active tetramer formation, KaiB4 + KaiA2 = KaiA2B4
1 * KaiA dimer and KaiB-active tetramer dissociation, KaiA2B4 -> KaiA2 + KaiB4
+5# Irreversible
Reactions:
1 * KaiA dimer formation, 2 * KaiA -> KaiA2
1 * KaiA dimer dissociation, KaiA2 -> 2 * KaiA
+6# Irreversible
Reactions:
1 * KaiA translation, -> KaiA; kaiA_mRNA
1 * KaiA protein degradation, KaiA ->
+7# Irreversible
Reactions:
1 * KaiB-active tetramer formation, 4 * KaiB = KaiB4
1 * KaiB-active tetramer dissociation, KaiB4 -> 4 * KaiB
+8# Irreversible
Reactions:
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+9# Irreversible
Reactions:
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
+10# Irreversible
Reactions:
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
+11# Irreversible
Reactions:
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
+12# Irreversible
Reactions:
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
+13# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+14# Irreversible
Reactions:
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
+15# Irreversible
Reactions:
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+16# Irreversible
Reactions:
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
+17# Irreversible
Reactions:
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+18# Irreversible
Reactions:
1 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+19# Irreversible
Reactions:
1 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
1 * KaiC protein degradation, KaiC ->
1 * KaiB protein degradation, KaiB ->
+20# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
+21# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
+22# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+23# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+24# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
+25# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
+26# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+27# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+28# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
+29# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
+30# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+31# Irreversible
Reactions:
-1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+32# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+33# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+34# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dephosphorylation, CPKaiC6 -> PPKaiC6; KaiA2B4
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+35# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * completely phosphorylated KaiC hexameric complex auto-dephosphorylation, CPKaiC6 -> PPKaiC6
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+36# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+37# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+38# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+39# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex dephosphorylation, PPKaiC6 -> KaiC6; KaiA2B4
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+40# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+41# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+42# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+43# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * partially phosphorylated KaiC hexameric complex auto-dephosphorylation, PPKaiC6 -> KaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
1 * KaiC hexameric complex dissociation, KaiC6 -> 6 * KaiC
+44# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
+45# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+46# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-2 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
+47# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
+48# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-1 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+49# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
-2 * completely phosphorylated KaiC hexameric complex formation, 6 * PKaiC = CPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
+50# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+51# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+52# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * partially phosphorylated KaiC hexameric complex phosphorylation, PPKaiC6 -> CPKaiC6; KaiA2
2 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+53# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+54# Irreversible
Reactions:
1 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
1 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
1 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
1 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+55# Irreversible
Reactions:
2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * partially phosphorylated KaiC hexameric complex auto-phosphorylation, PPKaiC6 -> CPKaiC6
2 * completely phosphorylated KaiC hexameric complex dissociation, CPKaiC6 -> 6 * PKaiC
+56# Irreversible
Reactions:
2 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
+57# Irreversible
Reactions:
2 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * KaiC hexameric complex phosphorylation, KaiC6 -> PPKaiC6; KaiA2
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC
+58# Irreversible
Reactions:
2 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
-2 * partially phosphorylated KaiC hexameric complex formation, 3 * KaiC + 3 * PKaiC = PPKaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
+59# Irreversible
Reactions:
2 * KaiC hexameric complex formation, 6 * KaiC = KaiC6
6 * KaiB and KaiC translation, -> KaiB + KaiC; kaiBC_mRNA
6 * phosphorylated KaiC protein degradation, PKaiC ->
6 * KaiB protein degradation, KaiB ->
2 * KaiC hexameric complex auto-phosphorylation, KaiC6 -> PPKaiC6
2 * partially phosphorylated KaiC hexameric complex dissociation, PPKaiC6 -> 3 * KaiC + 3 * PKaiC

Analysis data:     SBRML
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI