Models
Simulation of Jablonsky et al. 2014
The SBML file representing the requested model is shown below. Click "SBML download" to save the file into your client file system. The SBML file can be used for further analysis of the model by using third party tools.
SBML download
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
<model id="M35">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.model/35/"/>
</annotation>
<listOfCompartments>
<compartment id="cytosol" size="1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/9/"/>
</annotation>
</compartment>
<compartment id="external" size="1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/5/"/>
</annotation>
</compartment>
</listOfCompartments>
<listOfSpecies>
<species id="ADP" compartment="cytosol" initialConcentration="0.3447986077">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/51/"/>
</annotation>
</species>
<species id="ATP" compartment="cytosol" initialConcentration="1.15520132">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/52/"/>
</annotation>
</species>
<species id="Pi" compartment="cytosol" initialConcentration="4.999999759">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1056/"/>
</annotation>
</species>
<species id="ATPr" compartment="cytosol"/>
<species id="BPGA" compartment="cytosol" initialConcentration="0.007482485571">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1058/"/>
</annotation>
</species>
<species id="CO2_cyt" compartment="cytosol" initialConcentration="0.02">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/56/"/>
</annotation>
</species>
<species id="DHAP" compartment="cytosol" initialConcentration="0.1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1060/"/>
</annotation>
</species>
<species id="E4P" compartment="cytosol" initialConcentration="0.2288202267">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/264/"/>
</annotation>
</species>
<species id="F6P" compartment="cytosol" initialConcentration="0.4">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/182/"/>
</annotation>
</species>
<species id="FBP" compartment="cytosol" initialConcentration="0.07617467533">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/283/"/>
</annotation>
</species>
<species id="G1P" compartment="cytosol" initialConcentration="0.01359336237">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/195/"/>
</annotation>
</species>
<species id="G6P" compartment="cytosol" initialConcentration="1.94057631">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/187/"/>
</annotation>
</species>
<species id="GAP" compartment="cytosol" initialConcentration="0.3683626365">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/203/"/>
</annotation>
</species>
<species id="GCA" compartment="cytosol" initialConcentration="0.01235938354">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/224/"/>
</annotation>
</species>
<species id="GCEA" compartment="cytosol" initialConcentration="0.004000971532">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1059/"/>
</annotation>
</species>
<species id="GLY" compartment="cytosol" initialConcentration="0.5">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/150/"/>
</annotation>
</species>
<species id="Glycogen" compartment="cytosol" initialConcentration="20">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/231/"/>
</annotation>
</species>
<species id="GOA" compartment="cytosol" initialConcentration="0.032736383">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/156/"/>
</annotation>
</species>
<species id="HPR" compartment="cytosol" initialConcentration="0.1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/226/"/>
</annotation>
</species>
<species id="Mass" compartment="cytosol"/>
<species id="NADPH" compartment="cytosol" initialConcentration="0.1489955134">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/73/"/>
</annotation>
</species>
<species id="NADPHr" compartment="cytosol"/>
<species id="NADPp" compartment="cytosol" initialConcentration="0.2710044663">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/71/"/>
</annotation>
</species>
<species id="O2" compartment="cytosol" initialConcentration="0.02599999875">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/74/"/>
</annotation>
</species>
<species id="out" compartment="cytosol" initialConcentration="0"/>
<species id="OXA" compartment="cytosol" initialConcentration="0.1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/239/"/>
</annotation>
</species>
<species id="PEP" compartment="cytosol" initialConcentration="4.19091919">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/173/"/>
</annotation>
</species>
<species id="PGA" compartment="cytosol" initialConcentration="2.07">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/9/"/>
</annotation>
</species>
<species id="PGCA" compartment="cytosol" initialConcentration="0.01"/>
<species id="ppGA" compartment="cytosol" initialConcentration="4.19091918">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/188/"/>
</annotation>
</species>
<species id="Ri5P" compartment="cytosol" initialConcentration="0.0744045363">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/202/"/>
</annotation>
</species>
<species id="Ru5P" compartment="cytosol" initialConcentration="0.02689822284">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/237/"/>
</annotation>
</species>
<species id="RuBP" compartment="cytosol" initialConcentration="0.3105938683">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/370/"/>
</annotation>
</species>
<species id="S7P" compartment="cytosol" initialConcentration="0.5113194231">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/499/"/>
</annotation>
</species>
<species id="SBP" compartment="cytosol" initialConcentration="1.362618878">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/302/"/>
</annotation>
</species>
<species id="SER" compartment="cytosol" initialConcentration="0.5">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1034/"/>
</annotation>
</species>
<species id="Sink1" compartment="cytosol" initialConcentration="0"/>
<species id="Sink2" compartment="cytosol" initialConcentration="0"/>
<species id="Sink3" compartment="cytosol" initialConcentration="0"/>
<species id="Sink4" compartment="cytosol" initialConcentration="0"/>
<species id="Sink_DHAP" compartment="cytosol" initialConcentration="0"/>
<species id="Sink_E4P" compartment="cytosol" initialConcentration="0"/>
<species id="Sink_GAP" compartment="cytosol" initialConcentration="0"/>
<species id="Sink_PEP" compartment="cytosol" initialConcentration="0"/>
<species id="Sink_Ri5P" compartment="cytosol" initialConcentration="0"/>
<species id="Sucrose" compartment="cytosol" initialConcentration="1.5">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/185/"/>
</annotation>
</species>
<species id="THR" compartment="cytosol" initialConcentration="0.3">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1037/"/>
</annotation>
</species>
<species id="TSA" compartment="cytosol" initialConcentration="0.03243314432">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/1061/"/>
</annotation>
</species>
<species id="Xu5P" compartment="cytosol" initialConcentration="0.05580778704">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/245/"/>
</annotation>
</species>
<species id="CO2_ext" compartment="external" initialConcentration="0.1">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.entity/56/"/>
</annotation>
</species>
</listOfSpecies>
<listOfParameters>
<parameter id="K_GOA" value="0.1" constant="true"/>
<parameter id="K_Sink_PEP" value="7.81" constant="true"/>
<parameter id="KE10" value="1.54" constant="true"/>
<parameter id="KE11" value="2.35" constant="true"/>
<parameter id="KE12" value="0.32" constant="true"/>
<parameter id="KE4" value="0.1" constant="true"/>
<parameter id="KE5" value="1.57" constant="true"/>
<parameter id="KE7" value="0.3" constant="true"/>
<parameter id="KE8" value="0.83" constant="true"/>
<parameter id="KE_SS1" value="1.24" constant="true"/>
<parameter id="KE_SS2" value="0.0001" constant="true"/>
<parameter id="Keq_enol" value="1.56" constant="true"/>
<parameter id="Keq_gap_dehyd" value="0.548" constant="true"/>
<parameter id="Keq_PGM" value="0.035" constant="true"/>
<parameter id="kf_CO2" value="1.91" constant="true"/>
<parameter id="kf_NADPH" value="0.68" constant="true"/>
<parameter id="Kgap" value="1" constant="true"/>
<parameter id="Kgap_beta" value="0.54" constant="true"/>
<parameter id="KM101" value="0.118" constant="true"/>
<parameter id="Km112a" value="0.8" constant="true"/>
<parameter id="Km112b" value="0.15" constant="true"/>
<parameter id="KM132" value="0.05" constant="true"/>
<parameter id="KM51" value="0.3" constant="true"/>
<parameter id="KM52" value="0.4" constant="true"/>
<parameter id="KM53" value="0.02" constant="true"/>
<parameter id="KM61" value="0.033" constant="true"/>
<parameter id="KM71" value="0.1" constant="true"/>
<parameter id="KM71a" value="0.616" constant="true"/>
<parameter id="KM72" value="0.1" constant="true"/>
<parameter id="KM73" value="0.1" constant="true"/>
<parameter id="KM74" value="0.1" constant="true"/>
<parameter id="KM81" value="0.4" constant="true"/>
<parameter id="KM82" value="0.2" constant="true"/>
<parameter id="KM9" value="0.05" constant="true"/>
<parameter id="KM_PFK" value="0.8" constant="true"/>
<parameter id="Kmp_enol" value="0.95" constant="true"/>
<parameter id="Kmp_PGM_alpha" value="0.32" constant="true"/>
<parameter id="Kmp_PGM_beta" value="3.36" constant="true"/>
<parameter id="Kmp_PGM_gama" value="0.6" constant="true"/>
<parameter id="Kms_enol" value="0.39" constant="true"/>
<parameter id="Kms_PGM_alpha" value="1.2" constant="true"/>
<parameter id="Kms_PGM_beta" value="0.57" constant="true"/>
<parameter id="Kms_PGM_gama" value="2.58" constant="true"/>
<parameter id="knadph" value="0.927" constant="true"/>
<parameter id="knadph_beta" value="1.184" constant="true"/>
<parameter id="Knadpp" value="2" constant="true"/>
<parameter id="Knadpp_beta" value="1.3" constant="true"/>
<parameter id="Kpga" value="0.357" constant="true"/>
<parameter id="Kpga_beta" value="1.01" constant="true"/>
<parameter id="V1" value="0.991" constant="true"/>
<parameter id="V10" value="0.23" constant="true"/>
<parameter id="V11" value="1.3" constant="true"/>
<parameter id="V12" value="1.685" constant="true"/>
<parameter id="V13" value="0.43" constant="true"/>
<parameter id="V2" value="0.602" constant="true"/>
<parameter id="V3" value="0.536" constant="true"/>
<parameter id="V4" value="0.1" constant="true"/>
<parameter id="V5" value="1.613" constant="true"/>
<parameter id="V6" value="0.11" constant="true"/>
<parameter id="V7" value="0.3" constant="true"/>
<parameter id="V8" value="1.11" constant="true"/>
<parameter id="V9" value="0.159" constant="true"/>
<parameter id="V_GLY_syn" value="0.1" constant="true"/>
<parameter id="V_OXA1" value="0.25" constant="true"/>
<parameter id="V_OXA2" value="0.0002" constant="true"/>
<parameter id="V_PFK" value="0.0145" constant="true"/>
<parameter id="V_PP1" value="0.009" constant="true"/>
<parameter id="V_PP2a" value="0.001" constant="true"/>
<parameter id="V_PP2b" value="0.002" constant="true"/>
<parameter id="V_PP3" value="0.0042" constant="true"/>
<parameter id="V_PP4" value="0.43" constant="true"/>
<parameter id="V_PP5" value="0.002" constant="true"/>
<parameter id="V_PP6" value="0.004" constant="true"/>
<parameter id="V_PP7" value="0.05" constant="true"/>
<parameter id="V_Sink_DHAP" value="0" constant="true"/>
<parameter id="V_Sink_E4P" value="0.0009" constant="true"/>
<parameter id="V_Sink_GLY" value="0.0004" constant="true"/>
<parameter id="V_Sink_PEP" value="0.5" constant="true"/>
<parameter id="V_Sink_Ri5P" value="0.006" constant="true"/>
<parameter id="V_Sink_SER" value="0.0021" constant="true"/>
<parameter id="V_Sink_THR" value="0.001" constant="true"/>
<parameter id="V_SS1" value="0.052" constant="true"/>
<parameter id="V_synth_SER" value="0.0018" constant="true"/>
<parameter id="V_synth_THR" value="0.0005" constant="true"/>
<parameter id="V_TSA1" value="0.01" constant="true"/>
<parameter id="V_TSA2" value="0.023" constant="true"/>
<parameter id="V_TSA3" value="0.1" constant="true"/>
<parameter id="Vf_enol" value="1.69" constant="true"/>
<parameter id="Vf_PGM_alpha" value="0.64" constant="true"/>
<parameter id="Vf_PGM_beta" value="1.9" constant="true"/>
<parameter id="Vf_PGM_gama" value="1.59" constant="true"/>
<parameter id="Vgap_dehyd" value="0.824" constant="true"/>
<parameter id="Vgap_dehyd_beta" value="2.45" constant="true"/>
<parameter id="kf_ATP_LCgene" value="1" constant="true"/>
<parameter id="kf_NADPH_LCgene" value="1" constant="true"/>
<parameter id="kf_CO2_LCgene" value="1" constant="true"/>
<parameter id="V1_LCgene" value="1" constant="true"/>
<parameter id="V2_LCgene" value="1" constant="true"/>
<parameter id="V3_LCgene" value="1" constant="true"/>
<parameter id="V4_LCgene" value="1" constant="true"/>
<parameter id="V5_LCgene" value="1" constant="true"/>
<parameter id="V6_LCgene" value="1" constant="true"/>
<parameter id="V7_LCgene" value="1" constant="true"/>
<parameter id="V8_LCgene" value="1" constant="true"/>
<parameter id="V9_LCgene" value="1" constant="true"/>
<parameter id="V10_LCgene" value="1" constant="true"/>
<parameter id="V11_LCgene" value="1" constant="true"/>
<parameter id="V12_LCgene" value="1" constant="true"/>
<parameter id="V13_LCgene" value="1" constant="true"/>
<parameter id="V_PFK_LCgene" value="1" constant="true"/>
<parameter id="Vgap_dehyd_LCgene" value="1" constant="true"/>
<parameter id="Vgap_dehyd_beta_LCgene" value="1" constant="true"/>
<parameter id="Vf_PGM_alpha_LCgene" value="1" constant="true"/>
<parameter id="Vf_PGM_beta_LCgene" value="1" constant="true"/>
<parameter id="Vf_PGM_gama_LCgene" value="1" constant="true"/>
<parameter id="Vf_enol_LCgene" value="1" constant="true"/>
<parameter id="V_PP1_LCgene" value="1" constant="true"/>
<parameter id="V_PP2a_LCgene" value="1" constant="true"/>
<parameter id="V_PP2b_LCgene" value="1" constant="true"/>
<parameter id="V_PP3_LCgene" value="1" constant="true"/>
<parameter id="V_PP4_LCgene" value="1" constant="true"/>
<parameter id="V_PP5_LCgene" value="1" constant="true"/>
<parameter id="V_PP6_LCgene" value="1" constant="true"/>
<parameter id="V_GLY_syn_LCgene" value="1" constant="true"/>
<parameter id="V_SS1_LCgene" value="1" constant="true"/>
<parameter id="light_1" constant="false"/>
<parameter id="light_2" constant="false"/>
<parameter id="co2_diff" constant="false"/>
<parameter id="cc_1" constant="false"/>
<parameter id="cc_2" constant="false"/>
<parameter id="cc_3" constant="false"/>
<parameter id="cc_4" constant="false"/>
<parameter id="cc_5" constant="false"/>
<parameter id="cc_6" constant="false"/>
<parameter id="cc_7" constant="false"/>
<parameter id="cc_8" constant="false"/>
<parameter id="cc_9" constant="false"/>
<parameter id="cc_10" constant="false"/>
<parameter id="cc_11" constant="false"/>
<parameter id="cc_12" constant="false"/>
<parameter id="cc_13" constant="false"/>
<parameter id="gl_1" constant="false"/>
<parameter id="gl_2a" constant="false"/>
<parameter id="gl_2b" constant="false"/>
<parameter id="gl_3a" constant="false"/>
<parameter id="gl_3b" constant="false"/>
<parameter id="gl_3c" constant="false"/>
<parameter id="gl_4" constant="false"/>
<parameter id="pp_1" constant="false"/>
<parameter id="pp_2a" constant="false"/>
<parameter id="pp_2b" constant="false"/>
<parameter id="pp_3" constant="false"/>
<parameter id="pp_4" constant="false"/>
<parameter id="pp_5" constant="false"/>
<parameter id="pp_6" constant="false"/>
<parameter id="gsm_1" constant="false"/>
<parameter id="ss_1" constant="false"/>
<parameter id="kf_ATP" value="0.19" constant="true"/>
</listOfParameters>
<listOfRules>
<assignmentRule variable="light_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> kf_ATP </ci>
<ci> kf_ATP_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="light_2">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> kf_NADPH </ci>
<ci> kf_NADPH_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="co2_diff">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> kf_CO2 </ci>
<ci> kf_CO2_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V1 </ci>
<ci> V1_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_2">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V2 </ci>
<ci> V2_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_3">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V3 </ci>
<ci> V3_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_4">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V4 </ci>
<ci> V4_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_5">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V5 </ci>
<ci> V5_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_6">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V6 </ci>
<ci> V6_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_7">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V7 </ci>
<ci> V7_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_8">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V8 </ci>
<ci> V8_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_9">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V9 </ci>
<ci> V9_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_10">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V10 </ci>
<ci> V10_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_11">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V11 </ci>
<ci> V11_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_12">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V12 </ci>
<ci> V12_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="cc_13">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V13 </ci>
<ci> V13_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PFK </ci>
<ci> V_PFK_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_2a">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vgap_dehyd </ci>
<ci> Vgap_dehyd_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_2b">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vgap_dehyd_beta </ci>
<ci> Vgap_dehyd_beta_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_3a">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vf_PGM_alpha </ci>
<ci> Vf_PGM_alpha_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_3b">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vf_PGM_beta </ci>
<ci> Vf_PGM_beta_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_3c">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vf_PGM_gama </ci>
<ci> Vf_PGM_gama_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gl_4">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Vf_enol </ci>
<ci> Vf_enol_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP1 </ci>
<ci> V_PP1_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_2a">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP2a </ci>
<ci> V_PP2a_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_2b">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP2b </ci>
<ci> V_PP2b_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_3">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP3 </ci>
<ci> V_PP3_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_4">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP4 </ci>
<ci> V_PP4_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_5">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP5 </ci>
<ci> V_PP5_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="pp_6">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_PP6 </ci>
<ci> V_PP6_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="gsm_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_GLY_syn </ci>
<ci> V_GLY_syn_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="ss_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> V_SS1 </ci>
<ci> V_SS1_LCgene </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="ATPr">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<ci> ATP </ci>
<apply>
<plus/>
<ci> ATP </ci>
<ci> ADP </ci>
</apply>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="Mass">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<ci> Sink_PEP </ci>
<ci> Sink_DHAP </ci>
<ci> Sink_E4P </ci>
<ci> Sink_Ri5P </ci>
<ci> Sink1 </ci>
<ci> Sink2 </ci>
<ci> Sink3 </ci>
<ci> Sink4 </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="NADPHr">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<ci> NADPH </ci>
<apply>
<plus/>
<ci> NADPH </ci>
<ci> NADPp </ci>
</apply>
</apply>
</math>
</assignmentRule>
</listOfRules>
<listOfReactions>
<reaction id="R676" name="LIGHT_1 : ADP + Pi → ATP" reversible="false">
<listOfReactants>
<speciesReference species="ADP" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ATP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> light_1 </ci>
<ci> ADP </ci>
<pi/>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R678" name="CC_1 : RuBP + CO2 → 2*3PGA" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/689/"/>
</annotation>
<listOfReactants>
<speciesReference species="RuBP" stoichiometry="1"/>
<speciesReference species="CO2_cyt" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="PGA" stoichiometry="2"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="FBP"/>
<modifierSpeciesReference species="SBP"/>
<modifierSpeciesReference species="Pi"/>
<modifierSpeciesReference species="NADPH"/>
<modifierSpeciesReference species="O2"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> RuBP </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> cc_1 </ci>
<ci> CO2_cyt </ci>
</apply>
<apply>
<plus/>
<ci> CO2_cyt </ci>
<apply>
<times/>
<ci> k2765 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> O2 </ci>
<ci> k2767 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> RuBP </ci>
<apply>
<times/>
<ci> k2768 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> k2770 </ci>
</apply>
<apply>
<divide/>
<ci> FBP </ci>
<ci> k2772 </ci>
</apply>
<apply>
<divide/>
<ci> SBP </ci>
<ci> k2774 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k2776 </ci>
</apply>
<apply>
<divide/>
<ci> NADPH </ci>
<ci> k2778 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2765" value="0.0115"/>
<parameter id="k2767" value="0.222"/>
<parameter id="k2768" value="0.02"/>
<parameter id="k2770" value="0.84"/>
<parameter id="k2772" value="0.04"/>
<parameter id="k2774" value="0.075"/>
<parameter id="k2776" value="0.9"/>
<parameter id="k2778" value="0.07"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R679" name="CC_10 : S7P + GAP ↔ Ri5P + Xu5P" reversible="true">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/406/"/>
</annotation>
<listOfReactants>
<speciesReference species="S7P" stoichiometry="1"/>
<speciesReference species="GAP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Ri5P" stoichiometry="1"/>
<speciesReference species="Xu5P" stoichiometry="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="F6P"/>
<modifierSpeciesReference species="E4P"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_10 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> GAP </ci>
<ci> S7P </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> Ri5P </ci>
<ci> Xu5P </ci>
</apply>
<ci> KE10 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> KM71a </ci>
<ci> KM101 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<times/>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GAP </ci>
<ci> k2787 </ci>
</apply>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<ci> F6P </ci>
<ci> k2790 </ci>
</apply>
<apply>
<divide/>
<ci> S7P </ci>
<ci> k2791 </ci>
</apply>
</apply>
</apply>
<apply>
<divide/>
<ci> GAP </ci>
<ci> k2792 </ci>
</apply>
<apply>
<divide/>
<apply>
<plus/>
<apply>
<times/>
<ci> Xu5P </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<apply>
<plus/>
<ci> E4P </ci>
<ci> Ri5P </ci>
</apply>
<ci> KM71a </ci>
</apply>
</apply>
</apply>
<ci> E4P </ci>
<ci> Ri5P </ci>
</apply>
<ci> KM101 </ci>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2787" value="0.27"/>
<parameter id="k2790" value="0.54"/>
<parameter id="k2791" value="0.09"/>
<parameter id="k2792" value="0.09"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R680" name="CC_11 : Ri5P ↔ Ru5P" reversible="true">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/405/"/>
</annotation>
<listOfReactants>
<speciesReference species="Ri5P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Ru5P" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_11 </ci>
<apply>
<minus/>
<ci> Ri5P </ci>
<apply>
<divide/>
<ci> Ru5P </ci>
<ci> KE11 </ci>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> Ri5P </ci>
<ci> Ru5P </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R681" name="CC_12 : Xu5P ↔ Ru5P" reversible="true">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/408/"/>
</annotation>
<listOfReactants>
<speciesReference species="Xu5P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Ru5P" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_12 </ci>
<apply>
<minus/>
<ci> Xu5P </ci>
<apply>
<divide/>
<ci> Ru5P </ci>
<ci> KE12 </ci>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> Xu5P </ci>
<ci> Ru5P </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R682" name="CC_13 : Ru5P + ATP → RuBP + ADP" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/410/"/>
</annotation>
<listOfReactants>
<speciesReference species="ATP" stoichiometry="1"/>
<speciesReference species="Ru5P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ADP" stoichiometry="1"/>
<speciesReference species="RuBP" stoichiometry="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="PGA"/>
<modifierSpeciesReference species="Pi"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_13 </ci>
<ci> ATP </ci>
<ci> Ru5P </ci>
</apply>
<apply>
<times/>
<apply>
<plus/>
<apply>
<times/>
<ci> ATP </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> ADP </ci>
<ci> k2808 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> KM132 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> ADP </ci>
<ci> k3114 </ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> Ru5P </ci>
<apply>
<times/>
<ci> k2810 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> k2812 </ci>
</apply>
<apply>
<divide/>
<ci> RuBP </ci>
<ci> k2814 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k2816 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2808" value="2.5"/>
<parameter id="k2810" value="0.05"/>
<parameter id="k2812" value="2"/>
<parameter id="k2814" value="0.7"/>
<parameter id="k2816" value="4"/>
<parameter id="k3114" value="0.4"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R683" name="CC_2 : 3PGA + ATP → BPGA + ADP" reversible="false">
<listOfReactants>
<speciesReference species="PGA" stoichiometry="1"/>
<speciesReference species="ATP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="BPGA" stoichiometry="1"/>
<speciesReference species="ADP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_2 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> PGA </ci>
<ci> ATP </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> BPGA </ci>
<ci> ADP </ci>
</apply>
<ci> k2822 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> PGA </ci>
<ci> k2823 </ci>
</apply>
<apply>
<plus/>
<ci> ATP </ci>
<apply>
<times/>
<ci> k2824 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> ADP </ci>
<ci> k2825 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2822" value="0.000619"/>
<parameter id="k2823" value="0.24"/>
<parameter id="k2824" value="0.39"/>
<parameter id="k2825" value="0.23"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R684" name="CC_3 : BPGA + NADPH ↔ GAP + NADPp + Pi" reversible="false">
<listOfReactants>
<speciesReference species="BPGA" stoichiometry="1"/>
<speciesReference species="NADPH" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GAP" stoichiometry="1"/>
<speciesReference species="NADPp" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_3 </ci>
<ci> BPGA </ci>
<ci> NADPH </ci>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> BPGA </ci>
<ci> k2829 </ci>
</apply>
<apply>
<plus/>
<ci> NADPH </ci>
<ci> k2830 </ci>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2829" value="0.004"/>
<parameter id="k2830" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R685" name="CC_4 : GAP ↔ DHAP" reversible="true">
<listOfReactants>
<speciesReference species="GAP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="DHAP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_4 </ci>
<apply>
<minus/>
<ci> GAP </ci>
<apply>
<divide/>
<ci> DHAP </ci>
<ci> KE4 </ci>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> GAP </ci>
<ci> DHAP </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R686" name="CC_5 : GAP + DHAP ↔ FBP" reversible="true">
<listOfReactants>
<speciesReference species="GAP" stoichiometry="1"/>
<speciesReference species="DHAP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="FBP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_5 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> GAP </ci>
<ci> DHAP </ci>
</apply>
<apply>
<divide/>
<ci> FBP </ci>
<ci> KE5 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> KM51 </ci>
<ci> KM52 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GAP </ci>
<ci> KM51 </ci>
</apply>
<apply>
<divide/>
<ci> DHAP </ci>
<ci> KM52 </ci>
</apply>
<apply>
<divide/>
<ci> FBP </ci>
<ci> KM53 </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> GAP </ci>
<ci> DHAP </ci>
</apply>
<apply>
<times/>
<ci> KM51 </ci>
<ci> KM52 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R687" name="CC_6 : FBP → F6P + Pi" reversible="false">
<listOfReactants>
<speciesReference species="FBP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="F6P" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_6 </ci>
<ci> FBP </ci>
</apply>
<apply>
<plus/>
<ci> FBP </ci>
<apply>
<times/>
<ci> KM61 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> F6P </ci>
<ci> k2851 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k2853 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2851" value="0.7"/>
<parameter id="k2853" value="12"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R688" name="CC_7 : F6P + GAP ↔ E4P + Xu5P" reversible="true">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/407/"/>
</annotation>
<listOfReactants>
<speciesReference species="F6P" stoichiometry="1"/>
<speciesReference species="GAP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Xu5P" stoichiometry="1"/>
<speciesReference species="E4P" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_7 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> F6P </ci>
<ci> GAP </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> Xu5P </ci>
<ci> E4P </ci>
</apply>
<ci> KE7 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> F6P </ci>
<apply>
<times/>
<ci> KM73 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> Xu5P </ci>
<ci> KM71 </ci>
</apply>
<apply>
<divide/>
<ci> E4P </ci>
<ci> KM72 </ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> GAP </ci>
<ci> KM74 </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R689" name="CC_8 : DHAP + E4P ↔ SBP" reversible="true">
<listOfReactants>
<speciesReference species="DHAP" stoichiometry="1"/>
<speciesReference species="E4P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="SBP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_8 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> DHAP </ci>
<ci> E4P </ci>
</apply>
<apply>
<divide/>
<ci> SBP </ci>
<ci> KE8 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> E4P </ci>
<ci> KM82 </ci>
</apply>
<apply>
<plus/>
<ci> DHAP </ci>
<ci> KM81 </ci>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R690" name="CC_9 : SBP → S7P + Pi" reversible="false">
<listOfReactants>
<speciesReference species="SBP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="S7P" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="2"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="Pi"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> cc_9 </ci>
<ci> SBP </ci>
</apply>
<apply>
<plus/>
<ci> SBP </ci>
<apply>
<times/>
<ci> KM9 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<pi/>
<ci> k2875 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2875" value="12"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R691" name="CO2 dif : CO2{external} -> CO2{cytosol}" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/576/"/>
</annotation>
<listOfReactants>
<speciesReference species="CO2_ext" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="CO2_cyt" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> co2_diff </ci>
<ci> CO2_ext </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R693" name="GC_1 : GOA -> TSA" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/673/"/>
</annotation>
<listOfReactants>
<speciesReference species="GOA" stoichiometry="2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="TSA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_TSA1 </ci>
<ci> GOA </ci>
</apply>
<apply>
<plus/>
<ci> k2891 </ci>
<ci> GOA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2891" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R694" name="GC_2 : TSA -> GCEA" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/674/"/>
</annotation>
<listOfReactants>
<speciesReference species="TSA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GCEA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_TSA3 </ci>
<ci> TSA </ci>
</apply>
<apply>
<plus/>
<ci> k2896 </ci>
<ci> TSA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2896" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R695" name="GL_1 : F6P → FBP" reversible="false">
<listOfReactants>
<speciesReference species="F6P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="FBP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_1 </ci>
<ci> F6P </ci>
</apply>
<apply>
<plus/>
<ci> KM_PFK </ci>
<ci> F6P </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R696" name="GL_2a : GAP + NADPp + Pi ↔ BPGA + NADPH" reversible="true">
<listOfReactants>
<speciesReference species="GAP" stoichiometry="1"/>
<speciesReference species="NADPp" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="PGA" stoichiometry="1"/>
<speciesReference species="NADPH" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_2a </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> GAP </ci>
<ci> NADPp </ci>
</apply>
<apply>
<times/>
<ci> Keq_gap_dehyd </ci>
<ci> PGA </ci>
<ci> NADPH </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GAP </ci>
<ci> Kgap </ci>
</apply>
<apply>
<divide/>
<ci> PGA </ci>
<ci> Kpga </ci>
</apply>
</apply>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> NADPp </ci>
<ci> Knadpp </ci>
</apply>
<apply>
<divide/>
<ci> NADPH </ci>
<ci> knadph </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R697" name="GL_2b : GAP + NADPp + Pi ↔ BPGA + NADPH" reversible="true">
<listOfReactants>
<speciesReference species="GAP" stoichiometry="1"/>
<speciesReference species="NADPp" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="PGA" stoichiometry="1"/>
<speciesReference species="NADPH" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_2b </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> GAP </ci>
<ci> NADPp </ci>
</apply>
<apply>
<times/>
<ci> Keq_gap_dehyd </ci>
<ci> PGA </ci>
<ci> NADPH </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GAP </ci>
<ci> Kgap_beta </ci>
</apply>
<apply>
<divide/>
<ci> PGA </ci>
<ci> Kpga_beta </ci>
</apply>
</apply>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> NADPp </ci>
<ci> Knadpp_beta </ci>
</apply>
<apply>
<divide/>
<ci> NADPH </ci>
<ci> knadph_beta </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R698" name="GL_3a : 3PGA ↔ 2PGA" reversible="true">
<listOfReactants>
<speciesReference species="PGA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ppGA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_3a </ci>
<apply>
<minus/>
<ci> PGA </ci>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Keq_PGM </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> Kms_PGM_alpha </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> Kms_PGM_alpha </ci>
</apply>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Kmp_PGM_alpha </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R699" name="GL_3b : 3PGA ↔ 2PGA" reversible="true">
<listOfReactants>
<speciesReference species="PGA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ppGA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_3b </ci>
<apply>
<minus/>
<ci> PGA </ci>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Keq_PGM </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> Kms_PGM_beta </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> Kms_PGM_beta </ci>
</apply>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Kmp_PGM_beta </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R700" name="GL_3c : 3PGA ↔ 2PGA" reversible="true">
<listOfReactants>
<speciesReference species="PGA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ppGA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_3c </ci>
<apply>
<minus/>
<ci> PGA </ci>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Keq_PGM </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> Kms_PGM_gama </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> Kms_PGM_gama </ci>
</apply>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Kmp_PGM_gama </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R701" name="GL_4 : 2PGA ↔ PEP" reversible="true">
<listOfReactants>
<speciesReference species="ppGA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="PEP" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gl_4 </ci>
<apply>
<minus/>
<ci> ppGA </ci>
<apply>
<divide/>
<ci> PEP </ci>
<ci> Keq_enol </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci> Kms_enol </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> Kms_enol </ci>
</apply>
<apply>
<divide/>
<ci> PEP </ci>
<ci> Kmp_enol </ci>
</apply>
</apply>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R702" name="GSM_1 : GOA -> GLY" reversible="false">
<listOfReactants>
<speciesReference species="GOA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GLY" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> gsm_1 </ci>
<ci> GOA </ci>
</apply>
<apply>
<plus/>
<ci> K_GOA </ci>
<ci> GOA </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R703" name="GSM_2 : 3PGA -> SER" reversible="false">
<listOfReactants>
<speciesReference species="PGA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="SER" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_synth_SER </ci>
<ci> PGA </ci>
</apply>
<apply>
<plus/>
<ci> k2956 </ci>
<ci> PGA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2956" value="2"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R705" name="LIGHT_2 : NADPp → NADPH" reversible="false">
<listOfReactants>
<speciesReference species="NADPp" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="NADPH" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> light_2 </ci>
<ci> NADPp </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R706" name="OX_1 : GOA -> OXA" reversible="false">
<listOfReactants>
<speciesReference species="GOA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="OXA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_OXA1 </ci>
<ci> GOA </ci>
</apply>
<apply>
<plus/>
<ci> k2968 </ci>
<ci> GOA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2968" value="2"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R708" name="PP_1 : RuBP + O2 → 2PG + 3PGA" reversible="false">
<annotation>
<rdf:li xmlns:rdf="rdf" rdf:resource="http://identifiers.org/ecyano.rule/688/"/>
</annotation>
<listOfReactants>
<speciesReference species="RuBP" stoichiometry="1"/>
<speciesReference species="CO2_cyt" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="PGCA" stoichiometry="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="O2"/>
<modifierSpeciesReference species="FBP"/>
<modifierSpeciesReference species="SBP"/>
<modifierSpeciesReference species="Pi"/>
<modifierSpeciesReference species="NADPH"/>
<modifierSpeciesReference species="PGA"/>
</listOfModifiers>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> RuBP </ci>
<apply>
<divide/>
<apply>
<times/>
<ci> pp_1 </ci>
<ci> CO2_cyt </ci>
</apply>
<apply>
<plus/>
<ci> CO2_cyt </ci>
<apply>
<times/>
<ci> k2980 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> O2 </ci>
<ci> k2982 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> RuBP </ci>
<apply>
<times/>
<ci> k2983 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> k2985 </ci>
</apply>
<apply>
<divide/>
<ci> FBP </ci>
<ci> k2987 </ci>
</apply>
<apply>
<divide/>
<ci> SBP </ci>
<ci> k2989 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k2991 </ci>
</apply>
<apply>
<divide/>
<ci> NADPH </ci>
<ci> k2993 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2980" value="0.0115"/>
<parameter id="k2982" value="0.222"/>
<parameter id="k2983" value="0.02"/>
<parameter id="k2985" value="0.84"/>
<parameter id="k2987" value="0.08"/>
<parameter id="k2989" value="0.075"/>
<parameter id="k2991" value="0.9"/>
<parameter id="k2993" value="0.07"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R709" name="PP_2a : 2PG -> GCA" reversible="false">
<listOfReactants>
<speciesReference species="PGCA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GCA" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_2a </ci>
<ci> PGCA </ci>
</apply>
<apply>
<plus/>
<ci> PGCA </ci>
<apply>
<times/>
<ci> Km112a </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GCA </ci>
<ci> k2998 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k3000 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k2998" value="94"/>
<parameter id="k3000" value="2.55"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R710" name="PP_2b : 2PG -> GCA" reversible="false">
<listOfReactants>
<speciesReference species="PGCA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GCA" stoichiometry="1"/>
<speciesReference species="Pi" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_2b </ci>
<ci> PGCA </ci>
</apply>
<apply>
<plus/>
<ci> PGCA </ci>
<apply>
<times/>
<ci> Km112b </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GCA </ci>
<ci> k3005 </ci>
</apply>
<apply>
<divide/>
<pi/>
<ci> k3007 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3005" value="94"/>
<parameter id="k3007" value="2.55"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R711" name="PP_3 : GCA -> GOA" reversible="false">
<listOfReactants>
<speciesReference species="GCA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GOA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_3 </ci>
<ci> GCA </ci>
</apply>
<apply>
<plus/>
<ci> k3010 </ci>
<ci> GCA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3010" value="0.1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R714" name="PP_4 : GOA + SER <-> HPR + GLY" reversible="true">
<listOfReactants>
<speciesReference species="GOA" stoichiometry="1"/>
<speciesReference species="SER" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="HPR" stoichiometry="1"/>
<speciesReference species="GLY" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_4 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> GOA </ci>
<ci> SER </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> HPR </ci>
<ci> GLY </ci>
</apply>
<ci> k3017 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> GOA </ci>
<ci> k3018 </ci>
</apply>
<apply>
<plus/>
<ci> SER </ci>
<apply>
<times/>
<ci> k3019 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> GLY </ci>
<ci> k3020 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3017" value="607"/>
<parameter id="k3018" value="0.15"/>
<parameter id="k3019" value="1.7"/>
<parameter id="k3020" value="2"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R715" name="PP_5 : 2*GLY -> SER" reversible="false">
<listOfReactants>
<speciesReference species="GLY" stoichiometry="2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="SER" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_5 </ci>
<ci> GLY </ci>
</apply>
<apply>
<plus/>
<ci> k3023 </ci>
<ci> GLY </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3023" value="6"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R716" name="PP_6 : HPR -> GCEA" reversible="false">
<listOfReactants>
<speciesReference species="HPR" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="GCEA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> pp_6 </ci>
<apply>
<minus/>
<ci> HPR </ci>
<apply>
<divide/>
<ci> GCEA </ci>
<ci> k3028 </ci>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci> HPR </ci>
<apply>
<times/>
<ci> k3029 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> HPR </ci>
<ci> k3030 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3028" value="250000"/>
<parameter id="k3029" value="0.09"/>
<parameter id="k3030" value="12"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R717" name="PP_7 : GCEA + ATP -> 3PGA + ADP" reversible="false">
<listOfReactants>
<speciesReference species="ATP" stoichiometry="1"/>
<speciesReference species="GCEA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ADP" stoichiometry="1"/>
<speciesReference species="PGA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_PP7 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> ATP </ci>
<ci> GCEA </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> ADP </ci>
<ci> PGA </ci>
</apply>
<ci> k3036 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> GCEA </ci>
<ci> k3037 </ci>
</apply>
<apply>
<plus/>
<ci> ATP </ci>
<apply>
<times/>
<ci> k3038 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> PGA </ci>
<ci> k3039 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3036" value="300"/>
<parameter id="k3037" value="0.25"/>
<parameter id="k3038" value="0.21"/>
<parameter id="k3039" value="0.36"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R718" name="Sink Glycine : GLY → Sink2" reversible="false">
<listOfReactants>
<speciesReference species="GLY" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink2" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_GLY </ci>
<ci> GLY </ci>
</apply>
<apply>
<plus/>
<ci> k3043 </ci>
<ci> GLY </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3043" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R719" name="Sink oxalate : OXA -> Sink4" reversible="false">
<listOfReactants>
<speciesReference species="OXA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink4" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_OXA2 </ci>
<ci> OXA </ci>
</apply>
<apply>
<plus/>
<ci> k3047 </ci>
<ci> OXA </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3047" value="5"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R720" name="Sink PEP : PEP -> 3 * Sink_PEP" reversible="false">
<listOfReactants>
<speciesReference species="PEP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink_PEP" stoichiometry="3"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_PEP </ci>
<ci> PEP </ci>
</apply>
<apply>
<plus/>
<ci> K_Sink_PEP </ci>
<ci> PEP </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R721" name="Sink Serine : SER -> Sink2" reversible="false">
<listOfReactants>
<speciesReference species="SER" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink2" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_SER </ci>
<ci> SER </ci>
</apply>
<apply>
<plus/>
<ci> k3055 </ci>
<ci> SER </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3055" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R722" name="Sink Threonine : THR -> Sink2" reversible="false">
<listOfReactants>
<speciesReference species="THR" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink2" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_THR </ci>
<ci> THR </ci>
</apply>
<apply>
<plus/>
<ci> k3059 </ci>
<ci> THR </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3059" value="1"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R723" name="Sink1_DHAP : DHAP -> 3 * Sink_DHAP" reversible="false">
<listOfReactants>
<speciesReference species="DHAP" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink_DHAP" stoichiometry="3"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_DHAP </ci>
<ci> DHAP </ci>
</apply>
<apply>
<plus/>
<ci> k3063 </ci>
<ci> DHAP </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3063" value="0.6"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R724" name="Sink1_E4P : E4P -> 4 * Sink_E4P" reversible="false">
<listOfReactants>
<speciesReference species="E4P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink_E4P" stoichiometry="4"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_E4P </ci>
<ci> E4P </ci>
</apply>
<apply>
<plus/>
<ci> k3067 </ci>
<ci> E4P </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3067" value="0.28"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R725" name="Sink1_Ri5P : Ri5P -> 5 * Sink_Ri5P" reversible="false">
<listOfReactants>
<speciesReference species="Ri5P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Sink_Ri5P" stoichiometry="5"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_Sink_Ri5P </ci>
<ci> Ri5P </ci>
</apply>
<apply>
<plus/>
<ci> k3071 </ci>
<ci> Ri5P </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3071" value="0.61"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id="R726" name="SS_1 : F6P ↔ G6P" reversible="true">
<listOfReactants>
<speciesReference species="F6P" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="G6P" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> ss_1 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> KE_SS1 </ci>
<ci> F6P </ci>
</apply>
<ci> G6P </ci>
</apply>
</apply>
<apply>
<plus/>
<ci> F6P </ci>
<ci> G6P </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction id="R733" name="PP_8: GCEA + ATP -> ppGA + ADP" reversible="false">
<listOfReactants>
<speciesReference species="ATP" stoichiometry="1"/>
<speciesReference species="GCEA" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="ADP" stoichiometry="1"/>
<speciesReference species="ppGA" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> V_PP7 </ci>
<apply>
<minus/>
<apply>
<times/>
<ci> ATP </ci>
<ci> GCEA </ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci> ADP </ci>
<ci> ppGA </ci>
</apply>
<ci> k3123 </ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<ci> GCEA </ci>
<ci> k3124 </ci>
</apply>
<apply>
<plus/>
<ci> ATP </ci>
<apply>
<times/>
<ci> k3125 </ci>
<apply>
<plus/>
<cn type="integer"> 1 </cn>
<apply>
<divide/>
<ci> ppGA </ci>
<ci> k3126 </ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="k3123" value="300"/>
<parameter id="k3124" value="0.25"/>
<parameter id="k3125" value="0.21"/>
<parameter id="k3126" value="0.36"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI