Models
Matrix analysis of Fridlyand et al. 1995
This page displays elementary flux modes analysis for selected model.
You can view information about desired mode clicking on it. Information about corresponding reactions will unfold.
You can also download SBRML file clicking on link below.
List of Matrix:
Reactions:
1 * Hydration of CO2 in carb, CO2_carb -> HCO3_m_carb
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
1 * Hydration of CO2 in carb, CO2_carb -> HCO3_m_carb
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
Reactions:
1 * Diffusion of HCO3- c_e -> pps, HCO3_m_ocyt -> HCO3_m_pps
1 * HCO3- transport pps -> cyt_e, HCO3_m_pps -> HCO3_m_ocyt
1 * Diffusion of HCO3- c_e -> pps, HCO3_m_ocyt -> HCO3_m_pps
1 * HCO3- transport pps -> cyt_e, HCO3_m_pps -> HCO3_m_ocyt
Reactions:
1 * HCO3- transport cyt_e -> pps, HCO3_m_ocyt -> HCO3_m_pps
1 * HCO3- transport pps -> cyt_e, HCO3_m_pps -> HCO3_m_ocyt
1 * HCO3- transport cyt_e -> pps, HCO3_m_ocyt -> HCO3_m_pps
1 * HCO3- transport pps -> cyt_e, HCO3_m_pps -> HCO3_m_ocyt
Reactions:
1 * Hydration of CO2 in cyt_i, CO2_cyt_icyt -> HCO3_m_icyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
1 * Hydration of CO2 in cyt_i, CO2_cyt_icyt -> HCO3_m_icyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
Reactions:
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Hydration of CO2 in cyt_i, CO2_cyt_icyt -> HCO3_m_icyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Hydration of CO2 in cyt_i, CO2_cyt_icyt -> HCO3_m_icyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
Reactions:
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_e, HCO3_m_ocyt -> CO2_cyt_ocyt
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_e, HCO3_m_ocyt -> CO2_cyt_ocyt
Reactions:
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
Reactions:
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Conversion of CO2 to HCO3- cyt_e -> cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
Reactions:
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_e, HCO3_m_ocyt -> CO2_cyt_ocyt
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_e, HCO3_m_ocyt -> CO2_cyt_ocyt
Reactions:
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in cyt_i, HCO3_m_icyt -> CO2_cyt_icyt
Reactions:
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
1 * Inward diffusion of accumulated HCO3- c_e -> c_i, HCO3_m_ocyt -> HCO3_m_icyt
1 * Outward diffusion of CO2 c_i -> c_e, CO2_cyt_icyt -> CO2_cyt_ocyt
1 * Diffusion of HCO3- c_i -> carb, HCO3_m_icyt -> HCO3_m_carb
1 * Outward diffusion of CO2 carb -> c_i, CO2_carb -> CO2_cyt_icyt
1 * Hydration of CO2 in cyt_e, CO2_cyt_ocyt -> HCO3_m_ocyt
1 * Dehydration of HCO3- in carb, HCO3_m_carb -> CO2_carb
Analysis data: SBRML
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI