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Biochemical Space

Processes

+ Cyanobacterium in its environment
o Environmental processes
+ Cellular processes
o Respiration and photosynthesis
o Carbon concentrating mechanism (CCM)
o Respiration
o Clock mechanism
o Metabolism

Navigation
To browse the processes in cyanobacterium use either the graphical scheme below or the navigation panel on the left. The root level is displayed after clicking on the Biochemical Space tab in the main menu at the top of the screen.

The central feature of the ontology view is the graphical scheme representing the projection of cyanobacterium to respective biological processes. The graphical scheme is active, the individual processes implemented in the project are highlighted yellow when moving the mouse over them. After clicking on any implemented part, corresponding scheme of selected process is viewed.

Models Tab
The Models Tab displays all models containing selected process. More information can be obtained by clicking on specific model. After clicking on Details, you will be redirected to selected model.

Entities Tab
The Entities Tab displays all entities contained in selected process. More information can be obtained by unfolding specific entity and clicking on Details.

Rules Tab
Rules Tab contains information regarding the modeled rules in selected process. Individual rules are categorized into rule types and can be unfolded by clicking on desired one. After clicking on selected rule, more details are viewed.

Cyanobacterium in its environment

 
 
Models
Entities
Rules
+Clark et al. 2014 (in progress)
+E-cyano team 2017, clock & C-N metabolism
+Fridlyand et al. 1995
+Grimaud et al. 2014
+Hertel et al. 2013
+Jablonsky et al. 2014
+Miyoshi et al. 2007
+Plyusnina et al. (in prep.)
+(2E,6E)-farnesyl diphosphate synthase
+(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin)
+(R)-2-methylmalate dehydratase
+(R)-citramalate synthase
+1,2-diacylglycerol 3-glucosyltransferase
+1,4-alpha-glucan branching enzyme
+1,4-dihydroxy-2-naphthoyl-CoA hydrolase
+1,4-dihydroxy-2-naphthoyl-CoA synthase
+1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
+1-deoxy-D-xylulose-5-phosphate reductoisomerase
+1-deoxy-D-xylulose-5-phosphate synthase
+15-cis-phytoene synthase
+2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
+2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
+2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
+2-hydroxy-3-oxopropionate reductase
+2-isopropylmalate synthase
+2-oxoglutarate decarboxylase
+2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
+2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
+3'(2'),5'-bisphosphate nucleotidase
+3,4-dihydroxy-2-butanone-4-phosphate synthase
+3-isopropylmalate dehydratase
+3-isopropylmalate dehydrogenase
+3-methyl-2-oxobutanoate hydroxymethyltransferase
+3-oxoacyl-[acyl-carrier-protein] reductase
+4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
+4-aminobutyrate---2-oxoglutarate transaminase
+4-hydroxy-3-methylbut-2-enyl diphosphate reductase
+4-hydroxybenzoate polyprenyltransferase
+4-hydroxyphenylpyruvate dioxygenase
+4-hydroxythreonine-4-phosphate dehydrogenase
+4-phosphoerythronate dehydrogenase
+5'-nucleotidase
+5,6-dimethylbenzimidazole synthase
+5-(carboxyamino)imidazole ribonucleotide mutase
+5-(carboxyamino)imidazole ribonucleotide synthase
+5-amino-6-(5-phosphoribosylamino)uracil reductase
+6,7-dimethyl-8-ribityllumazine synthase
+6-phosphofructokinase
+6-phosphogluconolactonase
+acetate kinase
+acetate---CoA ligase
+acetoacetyl-CoA reductase
+acetolactate synthase
+acetyl-CoA C-acetyltransferase
+acetyl-CoA carboxylase
+aconitate hydratase
+acyl-[acyl-carrier-protein]---UDP-N-acetylglucosamine O-acyltransferase
+adenine phosphoribosyltransferase
+adenosine 5'-(tetrahydrogen triphosphate)
+adenosine 5'-(trihydrogen diphosphate)
+adenosylcobalamin/alpha-ribazole phosphatase
+adenosylcobinamide-GDP ribazoletransferase
+adenosylcobinamide-phosphate guanylyltransferase
+adenosylcobinamide-phosphate synthase
+adenosylcobyric acid synthase (glutamine-hydrolysing)
+adenosylhomocysteinase
+adenosylmethionine decarboxylase
+adenylate kinase
+adenylosuccinate lyase
+adenylosuccinate synthase
+adenylyl-sulfate kinase
+agmatinase
+alanine dehydrogenase
+alanine racemase
+alcohol dehydrogenase
+alcohol dehydrogenase (NADP+)
+aldehyde dehydrogenase (NAD+)
+all-trans-nonaprenyl diphosphate synthase [geranylgeranyl-diphosphate specific]
+all-trans-nonaprenyl-diphosphate synthase [geranyl-diphosphate specific]
+amidophosphoribosyltransferase
+aminodeoxychorismate lyase
+aminodeoxychorismate synthase
+aminomethyltransferase
+asparaginase
+asparagine synthase (glutamine-hydrolysing)
+aspartate 1-decarboxylase
+aspartate carbamoyltransferase
+ATP phosphoribosyltransferase
+ATPase
+beta-ketoacyl-[acyl-carrier-protein] synthase II
+beta-ketoacyl-[acyl-carrier-protein] synthase III
+branched-chain-amino-acid transaminase
+Ca2+-transporting ATPase
+carbon dioxide
+carbonate dehydratase
+catalase
+CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
+chlorophyll synthase
+chorismate lyase
+circadian clock protein KaiA
+circadian clock protein KaiB
+circadian clock protein kinase KaiC
+citrate (Si)-synthase
+cob(I)yrinic acid a,c-diamide adenosyltransferase
+cob(II)yrinic acid a,c-diamide reductase
+cobaltochelatase
+complex of circadian clock proteins KaiA and KaiB and KaiC
+complex of circadian clock proteins KaiA and KaiB and KaiC
+complex of KaiB6 and KaiC6
+coproporphyrinogen dehydrogenase
+coproporphyrinogen oxidase
+CTP synthase (glutamine hydrolysing)
+Cu2+-exporting ATPase
+cyanophycin synthase (L-aspartate-adding)
+cyanophycinase
+cysteine desulfurase
+cysteine synthase
+cytochrome b6/f complex
+cytochrome-c oxidase
+cytochrome-c oxidase, Cox, CytI
+cytoplasmic membrane
+cytosol
+D-alanine---D-alanine ligase
+D-lactate dehydrogenase
+dCTP deaminase
+dephospho-CoA kinase
+diacylglycerol kinase (ATP)
+diaminohydroxyphosphoribosylaminopyrimidine deaminase
+dihydrofolate reductase
+dihydrofolate synthase
+dihydrolipoyl dehydrogenase
+dihydrolipoyllysine-residue acetyltransferase
+dihydroneopterin aldolase
+dihydronicotinamide-adenine dinucleotide phosphate
+dihydroorotase
+dihydroorotate dehydrogenase (fumarate)
+dihydropteroate synthase
+dihydroxy-acid dehydratase
+dimethylallyltranstransferase
+dioxygen
+ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific]
+divinyl chlorophyllide a 8-vinyl-reductase
+DNA (cytosine-5-)-methyltransferase
+dTDP-4-dehydrorhamnose 3,5-epimerase
+dTDP-4-dehydrorhamnose reductase
+dTDP-glucose 4,6-dehydratase
+dTMP kinase
+enoyl-[acyl-carrier-protein] reductase (NADPH, Si-specific)
+enzyme with ec code 1.3.99.1
+erythrose-4-phosphate dehydrogenase
+FAD synthetase
+Fe3+-transporting ATPase
+ferredoxin
+ferredoxin---NADP+ reductase
+ferredoxin:protochlorophyllide reductase (ATP-dependent)
+ferredoxin:thioredoxin reductase
+ferrochelatase
+FMN reductase (NADPH)
+formate dehydrogenase (cytochrome)
+formyltetrahydrofolate deformylase
+fructokinase
+fructose-6-phosphate phosphoketolase
+fructose-bisphosphatase
+fructose-bisphosphate aldolase
+fumarate
+fumarate hydratase
+galactolipid galactosyltransferase
+gamma-glutamyltransferase
+geranylgeranyl diphosphate reductase
+geranylgeranyl diphosphate synthase
+glucokinase
+glucosamine-1-phosphate N-acetyltransferase
+glucose-1-phosphate adenylyltransferase
+glucose-1-phosphate cytidylyltransferase
+glucose-1-phosphate thymidylyltransferase
+glucose-6-phosphate dehydrogenase (NADP+)
+glucose-6-phosphate isomerase
+glucosylglycerol 3-phosphatase
+glucosylglycerol-phosphate synthase
+glutamate decarboxylase
+glutamate racemase
+glutamate---cysteine ligase
+glutamate---tRNA ligase
+glutamate-1-semialdehyde 2,1-aminomutase
+glutamine---fructose-6-phosphate transaminase (isomerizing)
+glutamyl-tRNA reductase
+glutathione peroxidase
+glutathione synthase
+glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating)
+glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
+glycerate 2-kinase
+glycerol kinase
+glycerol-3-phosphate dehydrogenase
+glycerol-3-phosphate dehydrogenase [NAD(P)+]
+glycine hydroxymethyltransferase
+glycine oxidase
+glycine transaminase
+glycogen phosphorylase
+glycolate dehydrogenase
+glyoxylate oxidase
+GMP synthase (glutamine-hydrolysing)
+Group of proteins with ec number 1.10.3.-
+Group of proteins with ec number 1.14.13.-
+Group of proteins with ec number 1.14.19.-
+Group of proteins with ec number 1.14.99.-
+Group of proteins with ec number 2.1.1.-
+Group of proteins with ec number 2.3.1.-
+Group of proteins with ec number 2.4.1.-
+Group of proteins with ec number 2.4.2.-
+Group of proteins with ec number 2.5.1.-
+Group of proteins with ec number 2.7.1.-
+Group of proteins with ec number 3.1.3.-
+Group of proteins with ec number 3.2.1.-
+Group of proteins with ec number 3.6.1.-
+Group of proteins with ec number 3.6.3.-
+Group of proteins with ec number 4.1.3.-
+Group of proteins with ec number 4.2.1.-
+GTP cyclohydrolase I
+GTP cyclohydrolase II
+guanylate kinase
+H+-transporting two-sector ATPase
+histidinol dehydrogenase
+histidinol-phosphatase
+homoserine O-acetyltransferase
+hydrogencarbonate
+hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
+hydroxyacylglutathione hydrolase
+hydroxymethylbilane synthase
+hydroxypyruvate reductase
+imidazoleglycerol-phosphate dehydratase
+IMP dehydrogenase
+inorganic diphosphatase
+inositol-3-phosphate synthase
+inositol-phosphate phosphatase
+iron-chelate-transporting ATPase
+isochorismate synthase
+isocitrate dehydrogenase (NADP+)
+isopentenyl-diphosphate Delta-isomerase
+K+-transporting ATPase
+KaiA dimer
+KaiA dimer and KaiC6 hexamer complex
+KaiA tetramer
+KaiB dimer
+KaiB tetramer
+KaiB tetramer and KaiA dimer complex
+KaiC hexamer
+ketol-acid reductoisomerase
+L-aspartate oxidase
+lactoylglutathione lyase
+leucyl aminopeptidase
+linoleoyl-CoA desaturase
+lipid-A-disaccharide synthase
+lysine decarboxylase
+magnesium chelatase
+magnesium protoporphyrin IX methyltransferase
+magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
+malate dehydrogenase
+malate dehydrogenase (oxaloacetate-decarboxylating)
+mannose-1-phosphate guanylyltransferase
+mannose-1-phosphate guanylyltransferase (GDP)
+mannose-6-phosphate isomerase
+membrane alanyl aminopeptidase
+methenyltetrahydrofolate cyclohydrolase
+methionine adenosyltransferase
+methionine synthase
+methylenetetrahydrofolate dehydrogenase (NADP+)
+methylenetetrahydrofolate reductase [NAD(P)H]
+methylglyoxal synthase
+molybdate-transporting ATPase
+mRNA encoding KaiA protein
+mRNA encoding KaiB and KaiC proteins
+NAD(P)+ transhydrogenase (Re/Si-specific)
+NAD+ kinase
+NAD+ synthase (glutamine-hydrolysing)
+NADH dehydrogenase
+NADH:ubiquinone reductase (H+-translocating)
+nicotinamide adenine dinucleotide (reduced)
+nicotinamide-adenine dinucleotide phosphate
+nicotinamide-nucleotide adenylyltransferase
+nicotinate phosphoribosyltransferase
+nicotinate-nucleotide adenylyltransferase
+nicotinate-nucleotide diphosphorylase (carboxylating)
+nicotinate-nucleotide---dimethylbenzimidazole phosphoribosyltransferase
+nucleoside-diphosphate kinase
+nucleoside-triphosphate diphosphatase
+O-acetylhomoserine aminocarboxypropyltransferase
+o-succinylbenzoate synthase
+o-succinylbenzoate---CoA ligase
+orotate phosphoribosyltransferase
+orotidine-5'-phosphate decarboxylase
+orthophosphate
+oxalate decarboxylase
+pantetheine-phosphate adenylyltransferase
+pantoate---beta-alanine ligase (AMP-forming)
+pantothenate kinase
+peptidoglycan glycosyltransferase
+phosphate acetyltransferase
+phosphate-transporting ATPase
+phosphatidate cytidylyltransferase
+phosphatidate phosphatase
+phosphatidylglycerophosphatase
+phospho-N-acetylmuramoyl-pentapeptide-transferase
+phosphoadenylyl-sulfate reductase (thioredoxin)
+phosphoenolpyruvate carboxylase
+phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)
+phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating)
+phosphoglucosamine mutase
+phosphoglycerate dehydrogenase
+phosphoglycerate kinase
+phosphoglycerate mutase (2,3-diphosphoglycerate-dependent)
+phosphoglycolate phosphatase
+phosphomannomutase
+phosphopantothenate---cysteine ligase
+phosphopantothenoylcysteine decarboxylase
+phosphopyruvate hydratase
+phosphoribosyl-AMP cyclohydrolase
+phosphoribosyl-ATP diphosphatase
+phosphoribosylamine---glycine ligase
+phosphoribosylaminoimidazolecarboxamide formyltransferase
+phosphoribosylaminoimidazolesuccinocarboxamide synthase
+phosphoribosylformylglycinamidine cyclo-ligase
+phosphoribosylformylglycinamidine synthase
+phosphoribosylglycinamide formyltransferase
+phosphoribulokinase
+phosphoserine phosphatase
+phosphoserine transaminase
+photosystem I
+photosystem II
+phycobilisome
+plastoquinol
+plastoquinol---plastocyanin reductase
+plastoquinone
+plastoquinone oxidase, CydBD
+polyphosphate kinase
+porphobilinogen synthase
+precorrin-2 C20-methyltransferase
+precorrin-3B C17-methyltransferase
+precorrin-3B synthase
+precorrin-4 C11-methyltransferase
+precorrin-6A reductase
+precorrin-6A synthase (deacetylating)
+precorrin-6B C5,15-methyltransferase (decarboxylating)
+precorrin-8X methylmutase
+protochlorophyllide reductase
+proton
+protoporphyrinogen oxidase
+pyridoxal 5'-phosphate synthase
+pyridoxine 5'-phosphate synthase
+pyruvate dehydrogenase (acetyl-transferring)
+pyruvate kinase
+pyruvate synthase
+pyruvate, water dikinase
+quinolinate synthase
+riboflavin kinase
+riboflavin synthase
+ribonucleoside-diphosphate reductase
+ribose-5-phosphate isomerase
+ribose-phosphate diphosphokinase
+ribulose-bisphosphate carboxylase
+ribulose-phosphate 3-epimerase
+S-methyl-5'-thioadenosine phosphorylase
+S-methyl-5-thioribose-1-phosphate isomerase
+sedoheptulose-bisphosphatase
+Serine
+serine O-acetyltransferase
+serine---glyoxylate transaminase
+spermidine synthase
+starch synthase (glycosyl-transferring)
+stearoyl-CoA 9-desaturase
+succinate
+succinate dehydrogenase, SDH
+succinate---CoA ligase (ADP-forming)
+succinate-semialdehyde dehydrogenase [NAD(P)+]
+sucrose-phosphate phosphatase
+sucrose-phosphate synthase
+sulfate adenylyltransferase
+sulfate-transporting ATPase
+sulfite reductase (ferredoxin)
+superoxide dismutase
+tartronate-semialdehyde synthase
+tetrahydrofolate synthase
+thiamine-phosphate diphosphorylase
+thiamine-phosphate kinase
+thioredoxin-disulfide reductase
+Threonine
+threonine-phosphate decarboxylase
+thylakoid membrane
+thymidylate synthase (FAD)
+tocopherol O-methyltransferase
+transaldolase
+transketolase
+triose-phosphate isomerase
+two KaiA dimers and KaiC hexamer complex
+type I NADPH dehydrogenase, NDH1
+type II NADH dehydrogenase, NDH2
+UDP-2,3-diacylglucosamine diphosphatase
+UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
+UDP-3-O-acyl-N-acetylglucosamine deacetylase
+UDP-glucose 4-epimerase
+UDP-N-acetylglucosamine 1-carboxyvinyltransferase
+UDP-N-acetylglucosamine diphosphorylase
+UDP-N-acetylmuramate dehydrogenase
+UDP-N-acetylmuramate---L-alanine ligase
+UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
+UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
+UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
+UDP-sulfoquinovose synthase
+UMP kinase
+UMP/CMP kinase
+undecaprenyl-diphosphate phosphatase
+undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
+uroporphyrinogen decarboxylase
+uroporphyrinogen-III C-methyltransferase
+uroporphyrinogen-III synthase
+UTP---glucose-1-phosphate uridylyltransferase
+water
+[acyl-carrier-protein] S-malonyltransferase
+light reactions of photosynthesis
+chlorophyll exciton of the internal antenna of PSII migration 1
+oxidation of S3-state of the oxygen-evolving complex OEC{3+} by Yz{+} in PSII RC
+oxidation of S2-state of the oxygen-evolving complex OEC{2+} by Yz{+} in PSII RC
+oxidation of SO-state of the oxygen-evolving complex OEC{n} by Yz{+} in PSII RC
+oxidation of S1-state of the oxygen-evolving complex OEC{+} by Yz{+} in PSII RC
+reduction of P680{+} and oxidation of Yz{n} in PSII RC
+binding of PQ to the Qb site
+protonation Qb{2-} to pqh2
+oxidation of Qa{-} and reduction of Qb{-} in PSII RC
+oxidation of Qa{-} and reduction of Qb{n} in PSII RC
+fluorescence emission from the chlorophyll of the internal PSI antenna
+oxidation of Pheo{-} and reduction of Qa{n} in PSII RC
+chlorophyll exciton of the internal antenna of PSII migration 3
+fluorescence emission from the chlorophyll of the internal PSII antenna
+light absorption in the chlorophyll of the internal PSII antenna
+exciton transfer from phycobilisome to PSII
+charge recombination between oxidized P700 and reduced Fa
+charge recombination between oxidized P700 and reduced Fx
+charge recombination between oxidized P700 and reduced A1
+reduction of oxidized primary electron donor in photosystem I
+reduction of oxidized P700
+electron transport from Fb to Ferredoxin
+electron transport from Fa to Fb
+electron transport from A0 to A1
+electron transport from A1 to Fx
+primary charge separation between the primary electron donor and the primary electron acceptor in ph
+energy transfer from chlorophyll-containing light-harvesting antenna of photosystem I to the primary
+non-radiative deactivation of excited states in chlorophyll-containing light-harvesting antenna of p
+radiative deactivation of excited states in chlorophyll-containing light-harvesting antenna of photo
+absorption of blue/red photon by chlorophyll-containing light-harvesting antenna of photosystem I
+energy transfer from phycobilin-containing phycobilisome to chlorophyll-containing light-harvesting
+radiative deactivation of excited states in phycobilin-containing phycobilisome by fluorescence emis
+absorption of orange photon by phycobilin-containing phycobilisome
+non-radiative deactivation of excited states in phycobilin-containing phycobilisome by non-regulated
+plastoquinone reduction
+reduction of oxidized high potential hemes by ferredoxin-dependent cyclic electron transport
+reduction of singly reduced high potential hemes by ferredoxin-dependent cyclic electron transport
+reduction of singly reduced high potential hemes by low potential heme b
+plastoquinol oxidation
+plastocyanin reduction
+reduction of oxidized high potential hemes by low potential heme b
+chlorophyll excitaton of the internal antenna PSII2 migration 2
+reduction-oxidation reaction
+plastoquinone reduction in the thylakoid membrane 1
+plastoquinole oxidation in the cytoplasmic membrane
+plastoquinole oxidation in the thylakoid membrane
+plastocyanin (PC) oxidation in the periplasmatic space
+plastocyanin (PC) oxidation in the thylakoid lumen
+plastoquinone reduction in the cytoplasmic membrane 1
+plastoquinone reduction in the thylakoid membrane 2
+plastoquinone reduction in the cytoplasmic membrane 2
+plastoquinone reduction in the cytoplasmic membrane 3
+plastoquinone reduction in the thylakoid membrane 4
+plastoquinone reduction in the cytoplasmic membrane 4
+energy metabolism
+ATP synthesis in periplasmic space
+ATP synthesis in lumen
+Aromatic Amino Acids
+L-Phenylalanine:2-oxoglutarate aminotransferase
+L-tyrosine:2-oxoglutarate aminotransferase
+Phosphoenolpyruvate:D-erythrose-4-phosphate C-(1-carboxyvinyl)transferase (phosphate hydrolysing, 2-
+2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate phosphate-lyase (cyclyzing)
+3-Dehydroquinate hydro-lyase
+Shikimate:NADP+ 3-oxidoreductase
+ATP:shikimate 3-phosphotransferase
+Phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase
+5-O-(1-Carboxyvinyl)-3-phosphoshikimate phosphate-lyase (chorismate-forming)
+Chorismate pyruvate-lyase (amino-accepting)
+chorismate pyruvate-lyase (amino-accepting; anthranilate-forming)
+N-(5-Phospho-D-ribosyl)anthranilate:pyrophosphate phosphoribosyl-transferase
+N-(5-Phospho-beta-D-ribosyl)anthranilate ketol-isomerase
+1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose-5-phosphate carboxy-lyase(cyclizing)
+(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
+L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3
+L-serine hydro-lyase (adding indole; L-tryptophan-forming)
+Chorismate pyruvatemutase
+prephenate hydro-lyase (decarboxylating; phenylpyruvate-forming)
+Prephenate:NAD+ oxidoreductase(decarboxylating)
+Arginine, Glutamate, Glutamine and Proline
+N2-Acetyl-L-ornithine:2-oxoglutarate aminotransferase
+L-glutamate:NAD+ oxidoreductase (transaminating)
+L-Glutamate:ammonia ligase (ADP-forming)
+L-glutamine amidohydrolase
+L-Glutamate:NADP+ oxidoreductase (deaminating)
+ATP:L-glutamate 5-phosphotransferase
+L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)
+L-glutamate gamma-semialdehyde:NAD+ oxidoreductase
+(S)-1-pyrroline-5-carboxylate:NAD+ oxidoreductase
+proline dehydrogenase (enzyme name) R34
+proline dehydrogenase (enzyme name) R35
+L-Proline:NADP+ 5-oxidoreductase
+acetyl-CoA:L-glutamate N-acetyltransferase
+N2-Acetyl-L-ornithine:L-glutamate N-acetyltransferase
+N2-Acetyl-L-ornithine amidohydrolase
+R41
+ATP:N-acetyl-L-glutamate 5-phosphotransferase
+N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphrylating)
+Carbamoyl-phosphate:L-ornithine carbamoyltransferase
+2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)
+L-Citrulline:L-aspartate ligase (AMP-forming)
+hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)
+ATP:carbamate phosphotransferase
+nitrite:ferredoxin oxidoreductase
+Ammonia:ferredoxin oxidoreductase
+L-glutamate:ferredoxin oxidoreductase (transaminating)
+L-Arginine iminohydrolase
+L-Ornithine:2-oxo-acid aminotransferase
+monoamine oxidase (enzyme name) R54
+monoamine oxidase (enzyme name) R55
+R56
+4-Guanidinobutanoate amidinohydrolase
+Urea amidohydrolase
+L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)
+trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase
+L-1-pyrroline-3-hydroxy-5-carboxylate:NAD+ oxidoreductase
+L-erythro-4-hydroxyglutamate:2-oxoglutarate aminotransferase
+4-hydroxy-2-oxoglutarate glyoxylate-lyase (pyruvate-forming)
+L-arginine carboxy-lyase (agmatine-forming)
+Asparagine, Aspartate, Lysine and Threonine
+L-threonine ammonia-lyase (2-oxobutanoate-forming)
+O-phospho-L-homoserine phosphate-lyase (adding water;L-threonine-forming)
+ATP:L-homoserine O-phosphotransferase
+L-homoserine:NADP+ oxidoreductase
+L-Aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
+ATP:L-aspartate 4-phosphotransferase
+4-hydroxy-tetrahydrodipicolinate synthase (enzyme name)
+2,3,4,5-tetrahydrodipicolinate:NADP+ 4-oxidoreductase
+LL-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase
+LL-2,6-Diaminoheptanedioate 2-epimerase
+meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming)
+L-aspartate:L-glutamine amido-ligase (AMP-forming)
+L-Asparagine amidohydrolase
+ATP:L-threonine O-phosphotransferase
+L-threonine-O-3-phosphate carboxy-lyase
+Carotenoid
+geranylgeranyl-diphosphate:geranylgeranyl-diphosphate geranylgeranyltransferase
+prephytoene diphosphate:geranylgeranyl-diphosphate geranylgeranyltransferase
+R93
+R94
+R95
+R96
+carotenoid beta-end group lyase (decyclizing) R97
+carotenoid beta-end group lyase (decyclizing) R98
+beta-carotene,NADH:oxygen 3-oxidoreductase
+beta-cryptoxanthin,NADH:oxygen 3'-oxidoreductase
+echinenone,NADH:oxygen 3-oxidoreductase
+R102
+Chlorophyll
+L-glutamate:tRNA(Glu) ligase (AMP-forming)
+L-glutamate-semialdehyde: NADP+ oxidoreductase(L-glutamyl-tRNA(Glu)-forming)
+(S)-4-Amino-5-oxopentanoate 4,5-aminomutase
+5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing; porphobilinogen-forming)
+porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)
+Hydroxymethylbilane hydro-lyase(cyclizing)
+Uroporphyrinogen-III carboxy-lyase
+Coproporphyrinogen:oxygen oxidoreductase(decarboxylating)
+coproporphyrinogen-III:S-adenosyl-L-methionine oxidoreductase(decarboxylating)
+protoporphyrinogen-IX:oxygen oxidoreductase
+Magnesium-protoporphyrin IX chelatase
+S-adenosyl-L-methionine:magnesium-protoporphyrin-IX O-methyltransferase
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06265
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06266
+magnesium-protoporphyrin-IX 13-monomethyl ester,NADPH:oxygen oxidoreductase (hydroxylating) R06267
+chlorophyllide-a:NADP+ oxidoreductase
+Chlorophyllide-a:NADP+ 7,8-oxidoreductase
+ATP-dependent ferredoxin:protochlorophyllide-a 7,8-oxidoreductase
+chlorophyllide-a:phytyl-diphosphate phytyltransferase
+Folate
+5-methyltetrahydrofolate:NADP+ oxidoreductase
+GTP 7,8-8,9-dihydrolase
+7,8-Dihydroneopterin 3'-triphosphate + H2O <=> Dihydroneopterin phosphate + Diphosphate
+2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine + Orthophosphate <=> Dih
+2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase
+glycolaldehyde:NAD+ oxidoreductase
+ATP:2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine 6'-pyrophosphotransferase
+2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine-diphosphate:4-aminobenzoate 2-amino-4-hydroxy
+2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine:4-aminobenzoate 2-amino-4-hydroxydihydropteri
+4-amino-4-deoxychorismate pyruvate-lyase
+chorismate:L-glutamine aminotransferase
+7,8-dihydropteroate:L-glutamate ligase (ADP-forming)
+5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase
+10-Formyltetrahydrofolate amidohydrolase
+5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)
+5,10-methylenetetrahydrofolate:NADP+ oxidoreductase
+General
+R147
+R148
+NADPH:oxidized-thioredoxin oxidoreductase
+carbonate hydro-lyase (carbon-dioxide-forming)
+diphosphate phosphohydrolase
+polyphosphate kinase (enzyme name) R153
+polyphosphate kinase (enzyme name) R154
+NADPH:NAD+ oxidoreductase
+superoxide:superoxide oxidoreductase
+hydrogen-peroxide:hydrogen-peroxide oxidoreductase
+glutathione:hydrogen-peroxide oxidoreductase
+glutathione:NADP+ oxidoreductase
+R161
+Glycerolipid
+1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase MGDG
+1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase DGDG
+1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase SQDG
+ATP:1,2-diacylglycerol 3-phosphotransferase MGDG
+ATP:1,2-diacylglycerol 3-phosphotransferase DGDG
+ATP:1,2-diacylglycerol 3-phosphotransferase SQDG
+CTP:phosphatidate cytidyltransferase
+CDP-diacylglycerol:sn-glycerol-3-phosphate 3-phosphatidyltransferase
+Phosphatidylglycerophosphate phosphohydrolase
+UDP-6-sulfo-6-deoxyglucose sulfohydrolase
+UDP-sulfoquinovose:diacylglycerol alpha-D-sulfoquinovosyltransferase
+UDP-glucose:1,2-diacyl-sn-glycerol 3-beta-glucosyltransferase MGDG
+UDP-glucose:1,2-diacyl-sn-glycerol 3-beta-glucosyltransferase DGDG
+R179
+R180
+3-beta-D-Galactosyl-1,2-diacylglycerol:mono-beta-D-galactosyldiacyl glycerol beta-D-galactosyltransf
+Cysteine, Glycine, Methionine and Serine
+acetyl-CoA:L-serine O-acetyltransferase
+O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase
+ATP:sulfate adenylyltransferase
+ATP:adenylylsulfate 3'-phosphotransferase
+adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-pho
+Adenosine 3',5'-bisphosphate 3'-phosphohydrolase
+Hydrogen-sulfide:ferredoxin oxidoreductase
+L-serine ammonia-lyase
+5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase
+glycine synthase
+5-Methyltetrahydrofolate:L-homocysteine S-methyltransferase
+S-Adenosyl-L-homocysteine hydrolase
+S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase
+ATP:L-methionine S-adenosyltransferase
+D-Glycerate:NADP+ 2-oxidoreductase
+L-Serine:glyoxylate aminotransferase
+ATP:(R)-glycerate 2-phosphotransferase
+(R)-Glycerate:NADP+ oxidoreductase
+glyoxylate carboxy-lyase (dimerizing; tartronate-semialdehyde-forming)
+Glyoxylate:oxygen oxidoreductase
+L-cysteine:[ThiI] sulfurtransferase
+Glycine:2-oxoglutarate aminotransferase
+Acetyl-CoA:L-homoserine O-acetyltransferase
+O-acetyl-L-homoserine:hydrogen sulfide S-(3-amino-3-carboxypropyl)transferase
+glycine:oxygen oxidoreductase (deaminating)
+3'-Phospho-5'-adenylyl sulfate 3'-phosphohydrolase
+glycine:NAD+ oxidoreductase (deaminating)
+S-adenosyl-L-methionine carboxy-lyase [(5-deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium-forming]
+3-Phospho-D-glycerate:NAD+ 2-oxidoreductase
+3-Phosphoserine:2-oxoglutarate aminotransferase
+O-phospho-L-serine phosphohydrolase
+Glutathione
+L-glutamate:L-cysteine gamma-ligase (ADP-forming)
+gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)
+glutathione gamma-glutamylaminopeptidase
+L-cysteinylglycine dipeptidase
+Glycolysis and Sugar
+ATP:D-glucose 6-phosphotransferase
+D-glucose-6-phosphate aldose-ketose-isomerase
+D-Fructose-1,6-bisphosphate 1-phosphohydrolase
+ATP:D-fructose-6-phosphate 1-phosphotransferase
+D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
+D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
+D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase (phosphorylating)
+D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
+ATP:3-phospho-D-glycerate 1-phosphotransferase
+D-phosphoglycerate 2,3-phosphomutase
+2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
+alpha-D-glucose 1,6-phosphomutase
+ATP:D-fructose 6-phosphotransferase
+D-mannose-6-phosphate aldose-ketose-isomerase
+D-mannose 6-phosphate 1,6-phosphomutase
+GTP:alpha-D-mannose-1-phosphate guanylyltransferase
+GDP:D-mannose-1-phosphate guanylyltransferase
+dTTP:alpha-D-glucose-1-phosphate thymidylyltransferase
+CTP:alpha-D-glucose-1-phosphate cytidylyltransferase
+dTDPglucose 4-epimerase
+dTDPglucose 4,6-hydro-lyase
+dTDP-4-dehydro-6-deoxy-alpha-D-glucose 3,5-epimerase
+dTDP-beta-L-rhamnose:NADP+ 4-oxidoreductase
+UTP:alpha-D-glucose-1-phosphate uridylyltransferase
+UDP-glucose 4-epimerase
+D-Glyceraldehyde:NAD+ oxidoreductase
+glycerol:NADP+ oxidoreductase
+ATP:glycerol 3-phosphotransferase
+sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase
+glycerol-3-phosphate dehydrogenase (enzyme name) R264
+glycerol-3-phosphate dehydrogenase (enzyme name) R265
+UDP-glucose:D-fructose-6-phosphate 2-alpha-D-glucosyltransferase
+sucrose-6F-phosphate phosphohydrolase
+ATP:alpha-D-glucose-1-phosphate adenylyltransferase
+ADP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase
+1,4-alpha-D-Glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase
+1,4-alpha-D-Glucan:orthophosphate alpha-D-glucosyltransferase R01821
+1,4-alpha-D-Glucan:orthophosphate alpha-D-glucosyltransferase R02111
+R641
+Heme
+protoheme ferro-lyase (protoporphyrin-forming)
+protoheme IX farnesyltransferase
+Heme O <=> Heme A
+Histidine
+1-(5-phospho-D-ribosyl)-ATP:diphosphate phospho-alpha-D-ribosyl-transferase
+Phosphoribosyl-ATP pyrophosphohydrolase
+1-(5-phospho-D-ribosyl)-AMP 1,6-hydrolase
+N-(5'-phospho-D-ribosylformimino)-5-amino-1- (5''-phospho-D-ribosyl)-4-imidazolecarboxamide ketol-is
+N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-ribosyl)-4-imidazolecarboxamide + L-
+D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate hydro-lyase
+5-Amino-2-oxopentanoate:2-oxoglutarate aminotransferase
+L-histidinol-phosphate phosphohydrolase
+L-Histidinol:NAD+ oxidoreductase
+L-histidinal:NAD+ oxidoreductase
+Isoleucine, Leucine and Valine
+pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
+2-Acetolactate pyruvate-lyase (carboxylating)
+(S)-2-Aceto-2-hydroxybutanoate pyruvate-lyase (carboxylating)
+2,3-Dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing)
+(S)-2-Aceto-2-hydroxybutanoate:NADP+ oxidoreductase (isomerizing)
+(R)-2,3-Dihydroxy-3-methylpentanoate:NADP+ oxidoreductase (isomerizing)
+2,3-Dihydroxy-3-methylbutanoate hydro-lyase
+(R)-2,3-Dihydroxy-3-methylpentanoate hydro-lyase
+L-Leucine:2-oxoglutarate aminotransferase
+L-Valine:2-oxoglutarate aminotransferase
+L-Isoleucine:2-oxoglutarate aminotransferase
+acetyl-CoA:3-methyl-2-oxobutanoate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming
+2-Isopropylmalate hydro-lyase
+3-Isopropylmalate hydro-lyase
+(2R,3S)-3-isopropylmalate:NAD+ oxidoreductase
+4-Methyl-2-oxopentanoate + CO2 <=> (2S)-2-Isopropyl-3-oxosuccinate
+Acetyl-CoA + Pyruvate + H2O <=> (R)-2-Methylmalate + CoA
+(R)-2-Methylmalate hydro-lyase (2-methylmaleate-forming)
+2-methylmaleate hydratase
+(2R,3S)-3-methylmalate:NAD+ oxidoreductase
+Inositol
+1D-myo-inositol-3-phosphate lyase (isomerizing)
+1D-myo-inositol 3-phosphate phosphohydrolase
+Lipid
+acetyl-CoA:[acyl-carrier-protein] S-acetyltransferase
+Acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+Acetyl-CoA:carbon-dioxide ligase (ADP-forming)
+Malonyl-CoA:[acyl-carrier-protein] S-malonyltransferase
+butyryl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+hexanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+Octanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+Decanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+dodecanoyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
+Tetradecanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylati
+Hexadecanoyl-[acp] + Malonyl-[acyl-carrier protein] <=> 3-Oxostearoyl-[acp] + Acyl-carrier protein +
+(3R)-3-Hydroxybutanoyl-[acyl-carrier protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxyhexanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxyoctanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxydecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxydodecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxytetradecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+(3R)-3-Hydroxypalmitoyl-[acyl-carrier-protein]:NADP+ oxidoreductase
+3-Oxostearoyl-[acp] + NADPH + H+ <=> (R)-3-Hydroxyoctadecanoyl-[acp] + NADP+
+(3R)-3-Hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase R354
+(3R)-3-Hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase R355
+(3R)-3-Hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase R356
+(3R)-3-Hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase R357
+(3R)-3-Hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase R358
+(3R)-3-Hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase R359
+(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase R360
+(R)-3-Hydroxyoctadecanoyl-[acp] <=> (2E)-Octadecenoyl-[acp] + H2O
+butyryl-[acp]:NADP+ trans-2-oxidoreductase
+hexanoyl-[acp]:NAD+ trans-2-oxidoreductase
+octanoyl-[acp]:NAD+ trans-2-oxidoreductase
+decanoyl-[acp]:NADP+ trans-2-oxidoreductase
+dodecanoyl-[acp]:NADP+ trans-2-oxidoreductase
+tetradecanoyl-[acp]:NADP+ trans-2-oxidoreductase
+hexadecanoyl-[acp]:NADP+ trans-2-oxidoreductase
+enoyl-[acyl-carrier-protein] reductase (NADPH, Si-specific) (enzyme name)
+stearoyl-CoA 9-desaturase (enzyme name) R370
+stearoyl-CoA 9-desaturase (enzyme name) R371
+R372
+linoleoyl-CoA desaturase (enzyme name) R373
+R374
+linoleoyl-CoA desaturase (enzyme name) R375
+Lipid-A-disaccharide
+(R)-3-Hydroxytetradecanoly-[acyl-carrier-protein]:UDP-N-acetyl-glucosamine 3-O-(3-hydroxytetradecano
+UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetylglucosamine amidohydrolase
+(3R)-3-hydroxymyristoyl-[acyl-carrier protein]:UDP-3-O-[(3R)-3-hydroxymyristoyl]-alpha-D-glucosamine
+UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine:2,3-bis-(3-hydroxytetradecanoyl)-alpha-D-glucosaminyl
+UDP-2,3-bis[(3R)-3-hydroxymyristoyl]-alpha-D-glucosamine 2,3-bis[(3R)-3-hydroxymyristoyl]-beta-D-glu
+Nicotinamide
+L-aspartate:oxygen oxidoreductase
+glycerone phosphate:iminosuccinate alkyltransferase (cyclizing)
+Nicotinate-nucleotide:pyrophosphate phosphoribosyltransferase (carboxylating)
+ATP:nicotinamide-nucleotide adenylyltransferase
+Deamido-NAD+:L-glutamine amido-ligase (AMP-forming)
+ATP:NAD+ 2'-phosphotransferase
+Cobamide coenzyme + GMP <=> Adenosine-GDP-cobinamide + alpha-Ribazole R389
+Pantothenate and CoA
+L-aspartate 1-carboxy-lyase (beta-alanine-forming)
+5,10-Methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase
+(R)-Pantoate:NADP+ 2-oxidoreductase
+(R)-Pantoate:beta-alanine ligase (AMP-forming)
+ATP:pantothenate 4'-phosphotransferase
+N-[(R)-4'-Phosphopantothenoyl]-L-cysteine carboxy-lyase
+(R)-4'-Phosphopantothenate:L-cysteine ligase R04230
+(R)-4'-Phosphopantothenate:L-cysteine ligase R04231
+ATP:pantetheine-4'-phosphate adenylyltransferase
+ATP:dephospho-CoA 3'-phosphotransferase
+Peptidoglycan
+L-glutamine:D-fructose-6-phosphate isomerase (deaminating)
+D-Glucosamine 1-phosphate 1,6-phosphomutase
+Acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase
+UTP:N-acetyl-alpha-D-glucosamine-1-phosphate uridylyltransferase
+Phosphoenolpyruvate:UDP-N-acetyl-D-glucosamine 1-carboxyvinyl-transferase
+UDP-N-acetylmuramate:NADP+ oxidoreductase
+UDP-N-acetylmuramate:L-alanine ligase (ADP-forming)
+UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase(ADP-forming)
+UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2,6-diaminoheptanedioate gamma-ligase (ADP-formin
+glutamate racemase
+alanine racemase
+D-alanine:D-alanine ligase (ADP-forming)
+UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate:D-alanyl-D-alanine ligase(ADP
+UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine:undecapre
+UDP-N-acetyl-D-glucosamine:undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,
+peptidoglycan glycosyltransferase (enzyme name)
+undecaprenyl-diphosphate phosphohydrolase
+Pentose phosphate pathway & Calvin-Benson Cycle
+sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
+Sedoheptulose 1,7-bisphosphate 1-phosphohydrolase
+D-glucose-6-phosphate:NADP+ 1-oxidoreductase
+6-Phospho-D-glucono-1,5-lactone lactonohydrolase
+6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)
+D-ribose-5-phosphate aldose-ketose-isomerase
+sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase
+D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase
+D-Ribulose-5-phosphate 3-epimerase
+sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase
+ATP:D-ribulose-5-phosphate 1-phosphotransferase
+ATP:D-ribose-5-phosphate diphosphotransferase
+glycerone-phosphate phosphate-lyase (methylglyoxal-forming)
+(R)-S-Lactoylglutathione methylglyoxal-lyase (isomerizing)
+(R)-S-Lactoylglutathione hydrolase
+D-fructose-6-phosphate D-erythrose-4-phosphate-lyase (adding phosphate; acetyl-phosphate-forming)
+D-Xylulose 5-phosphate D-glyceraldehyde-3-phosphate-lyase (adding phosphate; acetyl-phosphate-formin
+ATP:Sedoheptulose 7-phosphate 1-phosphotransferase
+Pyruvate and TCA
+ATP:pyruvate 2-O-phosphotransferase
+pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating)
+Acetate:CoA ligase (AMP-forming)
+Acetaldehyde:NAD+ oxidoreductase
+ethanol:NAD+ oxidoreductase
+Ethanol:NADP+ oxidoreductase
+phosphoenolpyruvate carboxylase (enzyme name)
+(S)-malate:NAD+ oxidoreductase
+L-Aspartate:2-oxoglutarate aminotransferase
+ATP:pyruvate,water phosphotransferase
+L-Alanine:NAD+ oxidoreductase (deaminating)
+citrate hydro-lyase (cis-aconitate-forming)
+isocitrate hydro-lyase (cis-aconitate-forming)
+Isocitrate:NADP+ oxidoreductase (decarboxylating)
+Succinate:CoA ligase (ADP-forming)
+(S)-malate hydro-lyase (fumarate-forming)
+1-3-99-1 (enzyme name) R513
+1-3-99-1 (enzyme name) R514
+acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)
+(R)-Lactate:NAD+ oxidoreductase
+(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)
+acetyl-CoA:phosphate acetyltransferase
+ATP:acetate phosphotransferase
+2-Phosphoglycolate phosphohydrolase
+pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
+Oxalate carboxy-lyase
+Formate:ferricytochrome-b1 oxidoreductase
+L-Aspartic acid:oxygen oxidoreductase (deaminating)
+L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)
+2-Oxoglutarate carboxy-lyase
+succinate-semialdehyde:NADP+ oxidoreductase
+4-aminobutanoate:2-oxoglutarate aminotransferase
+glycolate:acceptor 2-oxidoreductase
+Purine
+5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)
+5-Phospho-D-ribosylamine:glycine ligase (ADP-forming)
+10-Formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase
+5'-Phosphoribosylglycinamide + 5,10-Methenyltetrahydrofolate + H2O <=> 5'-Phosphoribosyl-N-formylgly
+5'-Phosphoribosylformylglycinamide:L-glutamine amido-ligase (ADP-forming)
+2-(Formamido)-N1-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)
+5-amino-1-(5-phospho-D-ribosyl)imidazole:carbon-dioxide ligase (ADP-forming)
+5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole carboxymutase
+1-(5-Phosphoribosyl)-5-amino-4-carboxyimidazole:L-aspartate ligase (ADP-forming)
+1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole AMP-lyase
+10-Formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase
+IMP 1,2-hydrolase (decyclizing)
+IMP:L-aspartate ligase (GDP-forming)
+N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)
+2'-Deoxyadenosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
+2'-deoxyadenosine 5'-monophosphate phosphohydrolase
+2'-Deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
+AMP:diphosphate phospho-D-ribosyltransferase
+ATP:GDP phosphotransferase
+ATP:dADP phosphotransferase
+ATP:dGDP phosphotransferase
+R556
+adenosine 5'-monophosphate phosphohydrolase
+IMP:NAD+ oxidoreductase
+Xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)
+ATP:GMP phosphotransferase
+phosphoribosylglycinamide formyltransferase (enzyme name)
+ATP:AMP phosphotransferase
+ATP:dAMP phosphotransferase
+Purine; Pyrimidine
+GTP diphosphohydrolase (diphosphate-forming)
+Pyrimidine
+Uridine triphosphate pyrophosphohydrolase
+ATP:dCDP phosphotransferase
+ATP:dUDP phosphotransferase
+carbamoyl-phosphate:L-aspartate carbamoyltransferase
+(S)-dihydroorotate amidohydrolase
+(S)-dihydroorotate:fumarate oxidoreductase
+Orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase
+orotidine-5'-phosphate carboxy-lyase (UMP-forming)
+ATP:CMP phosphotransferase
+ATP:UMP phosphotransferase
+ATP:UDP phosphotransferase
+ATP:CDP phosphotransferase
+UTP:ammonia ligase (ADP-forming)
+UTP:L-glutamine amido-ligase (ADP-forming)
+dCTP aminohydrolase
+CTP aminohydrolase
+ATP:dTMP phosphotransferase
+ATP:dUMP phosphotransferase
+thymidylate synthase (FAD) (enzyme name)
+2'-Deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase
+2'-Deoxyuridine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
+ATP:dTDP phosphotransferase
+Quinone and Tocopherol
+phytyl-diphosphate:homogentisate phytyltransferase (decarboxylating)
+delta-tocopherol lyase (decyclizing)
+gamma-tocopherol lyase (decyclizing)
+S-adenosyl-L-methionine:gamma-tocopherol 5-O-methyltransferase
+S-adenosyl-L-methionine:delta-tocopherol 5-O-methyltransferase
+chorismate pyruvate-lyase (4-hydroxybenzoate-forming)
+solanesyl-diphosphate:4-hydroxybenzoate nonaprenyltransferase
+R600
+R601
+S-adenosyl-L-methionine:2-methyl-6-phytyl-1,4-benzoquinol C3-methyltransferase
+chorismate hydroxymutase
+2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
+2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
+(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate hydrolyase (2-succinylbenzoate-forming
+O-Succinylbenzoate:CoA ligase (AMP-forming)
+4-(2-carboxyphenyl)-4-oxobutanoyl-CoA dehydratase (cyclizing)
+1,4-dihydroxy-2-naphthoyl-CoA hydrolase
+1,4-Dihydroxy-2-naphthoate + Phytyl diphosphate <=> 2-Phytyl-1,4-naphthoquinone + CO2 + Diphosphate
+2-Phytyl-1,4-naphthoquinone + S-Adenosyl-L-methionine <=> Phylloquinone + S-Adenosyl-L-homocysteine
+Quinone andTocopherol
+4-Hydroxyphenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)
+Riboflavin
+GTP 7,8-8,9-dihydrolase (diphosphate-forming)
+2,5-Diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase
+5-Amino-6-(5'-phospho-D-ribitylamino)uracil + H2O <=> 5-Amino-6-(1-D-ribitylamino)uracil + Orthophos
+5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase
+D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming)
+5-amino-6-(D-ribitylamino)uracil butanedionetransferase
+6,7-Dimethyl-8-(1-D-ribityl)lumazine:6,7-dimethyl-8-(1-D-ribityl)lumazine 2,3-butanediyltransferase
+ATP:riboflavin 5'-phosphotransferase
+ATP:FMN adenylyltransferase
+FMNH2:NADP+ oxidoreductase
+5,6-dimethylbenzimidazole synthase (enzyme name)
+Stress
+ADP-glucose:sn-glycerol-3-phosphate 2-b-D-glucosyltransferase
+2-(beta-D-glucosyl)-sn-glycerol-3-phosphate phosphohydrolase
+L-lysine carboxy-lyase (cadaverine-forming)
+Agmatine amidinohydrolase
+S-adenosylmethioninamine:putrescine 3-aminopropyltransferase
+S-adenosylmethioninamine:spermidine 3-aminopropyltransferase
+S-methyl-5'-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase
+5-Methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase
+PHB
+Acetyl-CoA:acetyl-CoA C-acetyltransferase
+(R)-3-Hydroxybutanoyl-CoA:NADP+ oxidoreductase
+n (R)-3-Hydroxybutanoyl-CoA <=> Poly-beta-hydroxybutyrate + n CoA
+Cyanophycin
+cyanophycin synthase (L-aspartate-adding) (enzyme name)
+cyanophycinase (enzyme name)
+Terpenoids
+1-Deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating)
+1-Deoxy-D-xylulose-5-phosphate isomeroreductase
+CTP: 2-C-Methyl-D-erythritol 4-phosphate cytidylyltransferase
+ATP:4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol 2-phosphotransferase
+2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol CMP-lyase (cyclizing)
+(E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:oxidized ferredoxin oxidoreductase (hydrating)
+isopentenyl-diphosphate:NAD(P)+ oxidoreductase
+dimethyallyl diphosphate:NADP+ oxidoreductase
+Isopentenyl-diphosphate delta3-delta2-isomerase
+Dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase
+Geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase
+trans,trans-Farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase
+(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate cistransferase (adding 8 isopentenyl units)
+geranylgeranyl reductase
+geranyl-diphosphate:isopentenyl-diphosphate transtransferase (adding 7 isopentenyl units)
+geranylgeranyl-diphosphate:isopentenyl-diphosphate transtransferase (adding 5 isopentenyl units)
+Thiamine pyrophosphate
+R664
+R665
+R666
+2-methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate:4-methyl-5-(2-phosphoethyl)-thiazole 2-methyl
+ATP:thiamin-phosphate phosphotransferase
+Transport
+R669
+R670
+R672
+R673
+R674
+R676
+R677
+R678
+R679
+R681
+R682
+R683
+R685
+ATP phosphohydrolase
+R689
+phosphate-transporting ATPase (enzyme name)
+iron-chelate-transporting ATPase (enzyme name)
+R693
+K+-transporting ATPase (enzyme name)
+R695
+R696
+R698
+R699
+R701
+R702
+R704
+Ca2+-transporting ATPase (enzyme name)
+R706
+R707
+Cu2+-exporting ATPase (enzyme name)
+molybdate-transporting ATPase (enzyme name)
+Fe3+-transporting ATPase (enzyme name)
+R712
+R713
+R714
+R715
+R716
+R717
+R718
+R719
+R720
+R721
+R722
+R723
+R724
+R725
+R726
+R727
+R728
+R729
+Vitamin B6
+D-erythrose 4-phosphate:NAD+ oxidoreductase
+4-phospho-D-erythronate:NAD+ 2-oxidoreductase
+O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase
+NAD-dependent threonine 4-phosphate dehydrogenase
+2-Amino-3-oxo-4-phosphonooxybutyrate <=> 3-Amino-2-oxopropyl phosphate + CO2
+pyridoxine 5'-phosphate synthase
+Pyridoxine 5-phosphate:oxygen oxidoreductase
+Vitamin B12
+S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase
+S-adenosyl-L-methionine:precorrin-4 C20-methyltransferase
+precorrin-3A,NADH:oxygen oxidoreductase (20-hydroxylating)
+S-adenosyl-L-methionine:precorrin-3B C17-methyltransferase
+S-adenosyl-L-methionine:precorrin-4 C11 methyltransferase
+Precorrin 6X + Acetate + S-Adenosyl-L-homocysteine <=> Precorrin 5 + S-Adenosyl-L-methionine + H2O
+precorrin-6Y:NADP+ oxidoreductase
+S-Adenosyl-L-methionine:1-precorrin-6Y C5,15-methyltransferase (C-12-decarboxylating)
+precorrin 8X 11,12-methylmutase
+Hydrogenobyrinate + 2 L-Glutamine + 2 ATP + 2 H2O <=> Hydrogenobyrinate a,c diamide + 2 Orthophospha
+hydrogenobyrinic-acid-a,c-diamide:cobalt cobalt-ligase (ADP-forming)
+cob(II)yrinic acid-a,c-diamide:FMN oxidoreductase
+ATP:cob(I)yrinic acid-a,c-diamide Cobeta-adenosyltransferase
+Adenosyl cobyrinate a,c diamide + 4 L-Glutamine + 4 ATP + 4 H2O <=> Adenosyl cobyrinate hexaamide +
+adenosylcobyric acid:(R)-1-aminopropan-2-yl phosphate ligase
+Adenosyl cobinamide phosphate + GTP <=> Adenosine-GDP-cobinamide + Diphosphate
+Nicotinate-nucleotide:dimethylbenzimidazole phospho-D-ribosyltransferase
+N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole + H2O <=> alpha-Ribazole + Orthophosphate
+Cobamide coenzyme + GMP <=> Adenosine-GDP-cobinamide + alpha-Ribazole R759
+phosphorylation/dephosphorylation
+Serine phosphorylation and dephosphorylation
+Threonine phosphorylation and dephosphorylation
+complex formation/dissociation
+KaiC hexamer formation and dissociation
+KaiB dimer formation and dissociation
+KaiB tetramer formation and dissociation
+KaiA2B4 complex formation and dissociation
+KaiB6C6 complex formation and dissociation
+KaiA2C6 complex formation and dissociation
+KaiA4C6 complex formation and dissociation
+KaiA4B6C6 complex formation and dissociation
+KaiA6B6C6 complex formation and dissociation (KaiA2)
+KaiA6B6C6 complex formation and dissociation (3 KaiA2)
+Transcription of kaiA_mRNA
+Transcription of kaiBC_mRNA
+Translation of KaiA
+Translation of KaiB and KaiC
+degradation
+kaiA mRNA degradation
+kaiBC mRNA degradation
+KaiC degradation
+KaiA degradation
+KaiB degradation
+Unclassified reactions
+ 3-phospho-D-glycerate carboxy-lyase
+Bicarbonate excretion
+Bicarbonate/carbonate conversion I
+Bicarbonate/carbonate conversion II
+Bubble-liquid carbon dioxide transfer
+Buffer acid-base reaction
+Carbon dioxide excretion
+Carbon dioxide hydration
+Carbon dioxide hydroxylation
+D-Ribulose 1,5-bisphosphate oxygenase
+electron transport from Fx to Fa
+Water self-dissociation
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI