This page displays basic information about selected experiment.
In case of series of experiments, these can be found below in List of experiments with links
| Series name: | Cyanothece Metabolic Oscillations |
|---|---|
| Inserted: | 2015-11-28 15:38:14 |
| Last update: | 2015-11-29 14:43:20 |
| Number of experiments: | 1 |
List of experiments
| Name | Started | Inserted | |
|---|---|---|---|
|
Light/Dark 16:8h Entrainment | 2008-07-12 02:15:00 | 2015-11-28 15:38:14 |
| Name: | Light/Dark 16:8h Entrainment |
|---|---|
| Description: | Exp #720 |
| Started: | 2008-07-12 02:15:00 |
| Device Type: | Photobioreactor-035 |
| Device Name: | PBR A |
| Device ID: | 002 |
| Experiment gassing: | 10 000 ppm CO2, 300 ml/min |
| Medium: | ASP2 -N |
| Organism: | Cyanothece ATCC 51142 |
| Stirring: | 180 rpm |
| Name: | Data dCO2 |
|---|---|
| Description: | Dissolved carbon dioxide was measured externally by METTLER TOLEDO SevenMulti |
| Device Type: | METTLER TOLEDO SevenMulti |
| Device Name: | Multimeter NH |
| Device ID: | 000 |
| Name: | Data dO2 |
|---|---|
| Description: | Dissolved oxygen was measured externally by PSI OxyCorder |
| Device Type: | PSI OxyCorder 401 |
| Device Name: | OxyCorder NH |
| Device ID: | 000 |
Temperature (measured)| Code: | temperature |
|---|---|
| Number of values: | 766 |
Light-RED (measured)| Code: | lightred |
|---|---|
| Number of values: | 490 |
Light-BLUE (measured)| Code: | lightblue |
|---|---|
| Number of values: | 468 |
Ft-RED (measured)| Code: | ftred |
|---|---|
| Number of values: | 391 |
Fm-RED (measured)| Code: | fmred |
|---|---|
| Number of values: | 270 |
QY-RED (measured)| Code: | qyred |
|---|---|
| Number of values: | 270 |
Ft-BLUE (measured)| Code: | ftblue |
|---|---|
| Number of values: | 375 |
Fm-BLUE (measured)| Code: | fmblue |
|---|---|
| Number of values: | 256 |
QY-BLUE (measured)| Code: | qyblue |
|---|---|
| Number of values: | 256 |
OD680 (measured)| Code: | od680 |
|---|---|
| Number of values: | 766 |
OD735 (measured)| Code: | od735 |
|---|---|
| Number of values: | 766 |
Chl_a proxy (computed)| Code: | chl_a_proxy |
|---|---|
| Number of values: | 766 |
dCO2 (measured)| Code: | dco2 |
|---|---|
| Number of values: | 292 |
| From: | Data dCO2 |
O2 evol (computed)| Code: | o2_evol |
|---|---|
| Number of values: | 98 |
| From: | Data dO2 |
O2 resp (computed)| Code: | o2_resp |
|---|---|
| Number of values: | 146 |
| Related to: |
Miyoshi et al. 2007: KaiB4
|
| From: | Data dO2 |
O2 sat (computed)| Code: | o2_sat |
|---|---|
| Number of values: | 99 |
| From: | Data dO2 |
dO2 (measured)| Code: | do2 |
|---|---|
| Number of values: | 292 |
| From: | Data dO2 |
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Experiments aim to reveal the dynamic features that occur during the metabolism of the unicellular, nitrogen fixing cyanobacterium Cyanothece sp. when exposed to diverse circadian forcing patterns (LD 16:8, LD 12:12, LD 8:16, LD 6:6).
url:http://dx.doi.org/10.1177/0748730409338367
url:http://dx.doi.org/10.1177/0748730409338367
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
kegg:T00686
kegg:T00686
As the biotechnological potential of Cyanothece 51142 varies with the time of the day, the argument that it will, similarly, depend on the phase of the culture growth is provided. Here the study of batch culture dynamics to discover the dominant constraints in the individual growth phases and identify potential for inducing or delaying transitions between culture growth phases in Cyanothece 51142 is presented.
url:http://dx.doi.org/10.1016/j.jbiotec.2012.04.009
url:http://dx.doi.org/10.1016/j.jbiotec.2012.04.009
SevenMulti™ is the perfect choice for applications where maximum measurement accuracy is required. The dual-channel instrument supports the measurement of two electrochemical parameters simultaneously and can be expanded by additional modules. It meets the latest requirements for quality control, data management and legal GLP regulations. The self-explanatory user interface allows intuitive operation at all stages.
url:http://us.mt.com/us/en/home/phased_out_products/Ph
url:http://us.mt.com/us/en/home/phased_out_products/Ph
The Photobioreactor FMT 150 has a flat-vessel design that enables uniform illumination over the whole culture. Growth of cultures is monitored by the integrated densitometer (OD 720 nm, 680 nm). Relative chlorophyll content of cultures can also be monitored continuously by the difference of optical densities at 680 and 720 nm. Instantaneous physiological state of the culture is measured by the Photosystem II quantum yield Fv/Fm.
url:http://www.psi.cz/products/photobioreactors/photob
url:http://www.psi.cz/products/photobioreactors/photob
Publication that descibes in detail advanced capabilities and features of the instrument.
url:http://dx.doi.org/10.1002/elsc.200800123
url:http://dx.doi.org/10.1002/elsc.200800123
Publication that descibes in detail basic capabilities and features of the instrument.
url:http://doi.wiley.com/10.1002/bit.21833
url:http://doi.wiley.com/10.1002/bit.21833
The OxyCorder is primarily used to measure dissolved oxygen in photosynthesis research. Therefore the impedance of three independent input channels is preset for different electrode sizes: 4 MΩ (Channel 1), 1.3 MΩ (Channel 2), and 33 kW (Channel 3 - for large electrodes, as bare platinum-silver). The fourth input channel enables voltage reading. The QxyCorder is supplied with OxyWin software that controls polarization voltage of the electrodes (0 to 1000 mV, two 10 bit A/D converters) and also enables displaying and analyzing the measured data.
url:http://www.psi.cz/products/other-instruments/oxyco
url:http://www.psi.cz/products/other-instruments/oxyco
Miyoshi F, Nakayama Y, Kaizu K, Iwasaki H, Tomita M (2007) A mathematical model for the Kai-protein-based chemical oscillator and clock gene expression rhythms in Cyanobacteria. J Biol Rhythms 22:69-8
Model detail
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI