Models
Model repository contains computational models of selected biological processes relevant for cyanobacteria. Models implemented on this website are manually curated, integrated within the e-cyanobacterium formal Biochemical Space, and associated with cross-references.
Most of the implemented models are already published, though some of the models present fresh work which might be yet unpublished. All of the models are available in public domain.
| Published Models | Unpublished Models | |
| Clock mechanism | Miyoshi et al. 2007 | |
| Hertel et al. 2013 | ||
| Metabolism | Jablonsky et al. 2014 | |
| Grimaud et al. 2014 | ||
| Photosynthesis | Plyusnina et al. 2016 | |
| Environment | Clark et al. 2014 | |
| Müller et al. 2019 | ||
| Integrated | E-cyano team 2017 |
The models can be explored by clicking on the model navigation tree displayed in the Navigation panel left.
Please use the following reference to cite this web site:
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI
M. Trojak, D. Safranek, J. Hrabec, J. Salagovic, F. Romanovska, J. Cerveny: E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In: Computational Methods in Systems Biology, CMSB 2016, Vol. 9859 of LNCS, pp. 316-322. Springer, 2016. DOI